Species: Neisseria perflava (HMT-0101) Primary Body Site: Oral
Download Options
LINKS: Ecology Home
| HMT-0101: [Body Sites Data]
[Taxon Description]
| Life Page: Neisseria perflava
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.07 | 0.20 | 0.14 | 0.17 | 0.44 | 1.27 | 1.37 | 3.55 | 2.81 | 3.05 | 0.18 | 0.04 | 0.01 | 0.19 | 0 | 0 | 0.08 | 0.01 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.01 | 0.01 | 0 | 0.01 | 0.03 | 1.27 | 0.23 | 0.01 | 0.05 | 0.04 | 0 | 0 | 0 | 0.19 | 0 | 0 | 0 | 0 |
| 90thp | 0.16 | 0.51 | 0.46 | 0.30 | 1.07 | 1.27 | 2.62 | 9.07 | 5.32 | 8.15 | 0.10 | 0.03 | 0.02 | 0.19 | 0 | 0.01 | 0.02 | 0 |
| Stdev | 0.09 | 0.39 | 0.38 | 0.35 | 0.78 | 0 | 1.14 | 4.30 | 4.34 | 4.01 | 0.94 | 0.15 | 0.01 | 0 | 0 | 0.01 | 0.75 | 0.06 |
| Prev(%) | 20.83 | 46.33 | 25.00 | 26.67 | 52.01 | 100.00 | 87.50 | 71.43 | 72.73 | 93.38 | 3.08 | 0 | 0 | 0 | 0 | 0 | 1.06 | 1.07 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.03 | 0.03 | 0.09 | 0.83 | 1.65 | 1.47 | 3.14 | 3.50 | 5.92 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.06 | 0.09 | 0.27 | 2.21 | 5.36 | 4.18 | 10.90 | 10.64 | 21.06 | 0 |
| Stdev | 0.12 | 0.08 | 0.24 | 1.76 | 2.58 | 2.62 | 6.56 | 6.75 | 10.22 | 0.01 |
| Prev(%) | 31.17 | 32.47 | 44.16 | 67.53 | 75.33 | 72.73 | 76.62 | 75.33 | 81.82 | 3.90 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to N. flavescens, N. perflava, and N. subflava were assigned one-third to each taxon.
Reads equally close to N. flavescens, N. perflava, and N. subflava were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.22 | 0.33 | 0.09 | 0.57 | 1.49 | 1.41 | 1.71 | 1.59 | 3.41 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.02 | 0.06 | 0.09 | 0.03 | 0.02 | 0.06 | 0 |
| 90thp | 0.74 | 1.10 | 0.28 | 1.40 | 3.54 | 3.69 | 4.48 | 5.08 | 8.97 | 0 |
| Stdev | 0.47 | 0.59 | 0.19 | 0.74 | 1.82 | 1.65 | 2.38 | 2.05 | 3.78 | 0 |
| Prev(%) | 64.86 | 77.03 | 58.11 | 94.59 | 95.95 | 97.30 | 95.95 | 94.59 | 95.95 | 0.70 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
No Notes
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
HMTs101-476-682 were not present singularly so these reads were split evenly at this body site (STO)
HMTs101-476-682 were not present singularly so these reads were split evenly at this body site (STO)
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8.27 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 101 and 610 were assigned half to each taxon.
Reads equally close to HMT 101, 476, and 610 were assigned one third to each taxon.
Reads equally close to HMT 101 and 610 were assigned half to each taxon.
Reads equally close to HMT 101, 476, and 610 were assigned one third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.19 | 0.39 | 0.49 | 1.58 | 3.44 | 3.63 | 2.70 | 1.74 | 3.87 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0.01 | 0.02 | 0.01 | 0.01 | 0 | 0 |
| 90thp | 0.16 | 0.07 | 0.59 | 4.20 | 13.06 | 15.47 | 6.69 | 3.76 | 10.32 | 0 |
| Stdev | 1.01 | 2.15 | 1.57 | 3.57 | 5.78 | 6.97 | 6.29 | 3.47 | 7.19 | 0.01 |
| Prev(%) | 68.92 | 70.59 | 88.37 | 91.43 | 92.86 | 96.00 | 90.91 | 96.77 | 95.00 | 5.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
