HOMD ::Species:Neisseria polysaccharea

Species: Neisseria polysaccharea (HMT-0737) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria polysaccharea

LINKS: Ecology Home | HMT-0737: [Body Sites Data] [Taxon Description] | Life Page: Neisseria polysaccharea

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Neisseria polysaccharea

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.05	0.01	0.15	0.03	0.04	0.06	0.10	0.08	0.07	0.01	0.04	0	0.02	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0	0.04	0.02	0	0	0	0	0	0	0.02	0	0	0	0
90^thp	0.07	0.10	0.05	0.53	0.08	0.04	0.10	0.25	0.17	0.20	0.01	0.01	0.01	0.02	0	0.01	0	0
Stdev	0.04	0.04	0.03	0.22	0.05	0	0.04	0.12	0.10	0.09	0.03	0.20	0.01	0	0	0.01	0.01	0
Prev(%)	0	0	0	40.00	0.62	0	0	0	0	0	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to N. cinerea, N. meningitidis, and N. polysaccharea were assigned one third to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0.01	0.44	0.02	0.06	0.01	0.03	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	1.66	0.03	0.07	0.03	0.02	0.02	0	0
Stdev	0.01	0.03	1.36	0.07	0.28	0.03	0.21	0.01	0.01	0
Prev(%)	12.99	16.88	37.66	22.08	29.87	19.48	18.18	24.68	5.20	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Some of the reads equidistant from these taxa (669-737-956) are included in HMT-737 because they are too close to differentiate at these sites (AKE,HPA,THR).

HMTs 669-737-956 were not present singularly so these reads were split evenly at these sites (LAF,SAL,SUPP)

Reads equidistant to HMT-669 and HMT-737 were assigned to each taxon in proportion to the abundance of HMT-669 and HMT-737 individually at this body site (THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0.88	0	0.09	0.03	0.05	0	0	0	0	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0.01	2.55	0	0.15	0.04	0.01	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.02	2.30	0	0.54	0.11	0.46	0	0	0	0	0	0.04	0	0	0	0	0
Prev(%)	0	19.20	37.76	0	31.54	26.92	18.45	0	0	0	0	0	9.20	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Neither HMT-737 nor HMT-956 were present singularly so these reads were split evenly at these sites (AKE,BMU,HPA,RAF,RRC,SAL,SUBP,SUPP,TDO).Neither HMT-669 nor HMT-737 were present singularly so these reads were split evenly at this site (LRC).Because HMT-956 is not present individually, all equidistant reads were assigned to HMT-737 at this body site (PTO).

Reads equidistant to HMT-669 and HMT-737 were assigned to each taxon in proportion to the abundance of HMT-669 and HMT-737 individually at this body site (THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	1.08	0.12	0.12	0.06	0.05	0.13	0	0	0.06	0.02	0	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	3.83	0.17	0.19	0.13	0.03	0.12	0	0	0	0	0	0.04	0	0	0	0
Stdev	0.07	0.04	2.69	0.53	0.61	0.23	0.35	0.66	0.03	0	1.08	0.32	0	0.18	0	0	0	0
Prev(%)	14.07	15.61	45.93	25.31	29.16	30.66	18.69	29.93	7.79	0	1.27	9.57	0	15.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 669, 737, and 956 were assigned one third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0.02	0.01	0.04	0.05	0.03	0.02	0.08	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.01	0.02	0.10	0.06	0.08	0.01	0.18	0
Stdev	0.01	0	0.07	0.04	0.11	0.14	0.08	0.07	0.22	0
Prev(%)	21.62	26.47	55.81	51.43	78.57	48.00	51.52	54.84	52.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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