Species: Neisseria subflava (HMT-0476) Primary Body Site: Oral
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| HMT-0476: [Body Sites Data]
[Taxon Description]
| Life Page: Neisseria subflava
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.06 | 0.16 | 0.09 | 0.13 | 0.35 | 1.00 | 1.44 | 3.35 | 2.97 | 2.38 | 0.18 | 0.03 | 0.01 | 0.13 | 0 | 0 | 0.02 | 0.01 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.01 | 0.01 | 0 | 0 | 0.02 | 1.00 | 0.22 | 0.01 | 0.06 | 0.05 | 0 | 0 | 0 | 0.13 | 0 | 0 | 0 | 0 |
| 90thp | 0.15 | 0.31 | 0.32 | 0.15 | 0.80 | 1.00 | 3.07 | 7.35 | 3.81 | 6.21 | 0.08 | 0.02 | 0.02 | 0.13 | 0 | 0.01 | 0.02 | 0 |
| Stdev | 0.08 | 0.55 | 0.22 | 0.25 | 0.60 | 0 | 1.57 | 3.55 | 6.63 | 3.20 | 0.87 | 0.10 | 0.01 | 0 | 0 | 0.01 | 0.12 | 0.04 |
| Prev(%) | 16.67 | 41.01 | 12.50 | 13.33 | 45.51 | 100.00 | 75.00 | 71.43 | 72.73 | 92.43 | 3.08 | 0 | 0 | 0 | 0 | 0 | 1.06 | 1.07 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.98 | 1.27 | 0.06 | 0.15 | 0.31 | 0.68 | 0.28 | 0.43 | 1.03 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 2.30 | 1.98 | 0.08 | 0.46 | 0.62 | 2.30 | 0.39 | 0.29 | 0.20 | 0 |
| Stdev | 3.24 | 4.67 | 0.26 | 0.43 | 0.87 | 1.86 | 1.14 | 1.70 | 4.11 | 0 |
| Prev(%) | 28.57 | 37.66 | 16.88 | 35.06 | 33.77 | 37.66 | 29.87 | 24.68 | 23.38 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to N. flavescens, N. perflava, and N. subflava were assigned one-third to each taxon.
Reads equally close to N. flavescens, N. perflava, and N. subflava were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.22 | 0.33 | 0.09 | 0.57 | 1.49 | 1.41 | 1.71 | 1.59 | 3.41 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.02 | 0.06 | 0.09 | 0.03 | 0.02 | 0.06 | 0 |
| 90thp | 0.74 | 1.10 | 0.28 | 1.40 | 3.54 | 3.69 | 4.48 | 5.08 | 8.97 | 0 |
| Stdev | 0.47 | 0.59 | 0.19 | 0.74 | 1.82 | 1.65 | 2.38 | 2.05 | 3.78 | 0 |
| Prev(%) | 64.86 | 77.03 | 58.11 | 94.59 | 95.95 | 97.30 | 95.95 | 94.59 | 95.95 | 0.70 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-476 and HMT-610 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-610 individually at these sites (AKE,BMU,LRC,PTO).
Reads equidistant to HMT-476 and HMT-682 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-682 individually at these sites (HPA,RAF,THR,TDO).
Some of the reads equidistant from these taxa (101-476-682) are included in HMT-476 because they are too close to differentiate at this site (THR).
Because HMT-682 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (ANA,RRC).
Because HMT-101 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (SAL,SUBP).
Because HMT-610 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (LAF,SUPP).
Reads equidistant to HMT-476 and HMT-610 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-610 individually at these sites (AKE,BMU,LRC,PTO).
Reads equidistant to HMT-476 and HMT-682 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-682 individually at these sites (HPA,RAF,THR,TDO).
Some of the reads equidistant from these taxa (101-476-682) are included in HMT-476 because they are too close to differentiate at this site (THR).
Because HMT-682 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (ANA,RRC).
Because HMT-101 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (SAL,SUBP).
Because HMT-610 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (LAF,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.44 | 0.49 | 0.10 | 1.48 | 3.35 | 2.38 | 4.35 | 5.28 | 7.45 | 0.11 | 0.10 | 0.04 | 0.13 | 0.23 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.03 | 0.13 | 0.06 | 0.05 | 0.07 | 0.08 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.09 | 0.91 | 0.15 | 3.77 | 7.05 | 5.18 | 13.14 | 17.70 | 22.02 | 0.20 | 0.09 | 0.07 | 0.35 | 0.29 | 0 | 0 | 0 | 0 |
| Stdev | 1.26 | 1.49 | 0.41 | 2.02 | 5.21 | 3.15 | 6.92 | 8.56 | 9.01 | 0.49 | 0.86 | 0.16 | 0.41 | 1.20 | 0 | 0 | 0 | 0 |
| Prev(%) | 76.16 | 82.78 | 48.25 | 90.41 | 92.62 | 93.08 | 95.24 | 94.00 | 97.42 | 41.00 | 29.60 | 24.36 | 35.63 | 33.18 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
Because HMT-610 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (AKE,LRC,RAF,RRC).
Some of the reads equidistant from these taxa (101-476-682) are included in HMT-476 because they are too close to differentiate at these sites (AKE,ANA,BMU,HPA,LAF,PTO,RRC,SAL,SUBP,SUPP,THR,TDO,RAF).
Neither HMT-476 nor HMT-610 were present singularly so these reads were split evenly at these sites (ANA,LAF).
HMTs 101-476-682 were not present singularly so these reads were split evenly at this body site (STO)
Reads equidistant to HMT-476 and HMT-610 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-610 individually at these sites (BMU,HPA,PTO,SAL,SUBP,SUPP,THR,TDO).
Because HMT-610 is not present individually, all equidistant reads were assigned to HMT-476 at these sites (AKE,LRC,RAF,RRC).
Some of the reads equidistant from these taxa (101-476-682) are included in HMT-476 because they are too close to differentiate at these sites (AKE,ANA,BMU,HPA,LAF,PTO,RRC,SAL,SUBP,SUPP,THR,TDO,RAF).
Neither HMT-476 nor HMT-610 were present singularly so these reads were split evenly at these sites (ANA,LAF).
HMTs 101-476-682 were not present singularly so these reads were split evenly at this body site (STO)
Reads equidistant to HMT-476 and HMT-610 were assigned to each taxon in proportion to the abundance of HMT-476 and HMT-610 individually at these sites (BMU,HPA,PTO,SAL,SUBP,SUPP,THR,TDO).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.49 | 0.74 | 0.90 | 2.28 | 5.35 | 3.94 | 5.04 | 4.47 | 8.20 | 0.03 | 0.43 | 0.36 | 0.32 | 0.88 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.08 | 0.22 | 0.24 | 0.06 | 0.08 | 0.16 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.37 | 1.70 | 2.12 | 5.56 | 13.54 | 11.07 | 15.04 | 12.48 | 22.03 | 0.07 | 0.14 | 0.26 | 0.55 | 1.15 | 0 | 0 | 0 | 0 |
| Stdev | 1.35 | 1.70 | 2.44 | 3.32 | 6.26 | 4.73 | 7.17 | 6.44 | 9.47 | 0.14 | 3.48 | 2.34 | 1.21 | 3.02 | 0 | 0 | 0 | 0.03 |
| Prev(%) | 73.33 | 86.83 | 72.59 | 94.54 | 96.42 | 97.62 | 93.46 | 95.62 | 95.86 | 30.65 | 29.62 | 32.72 | 48.28 | 48.00 | 0 | 0 | 0 | 8.27 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 101, 476, and 610 were assigned one third to each taxon.
Reads equally close to HMT 101, 476, and 610 were assigned one third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.16 | 0.19 | 0.08 | 0.56 | 0.17 | 0.24 | 0.07 | 0.07 | 0.09 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.31 | 0.15 | 0.20 | 0.69 | 0.44 | 0.64 | 0.15 | 0.10 | 0.19 | 0 |
| Stdev | 0.51 | 0.70 | 0.20 | 1.70 | 0.24 | 0.53 | 0.10 | 0.12 | 0.22 | 0 |
| Prev(%) | 62.16 | 76.47 | 76.74 | 85.71 | 85.71 | 86.00 | 90.91 | 87.10 | 90.00 | 5.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.12 | 0.62 | 0.55 | 0.51 | 1.77 | 5.17 | 4.65 | 6.85 | 7.14 | 8.97 | 0.37 | 0.01 | 0.01 | 0.06 | 0.06 | 0 | 0.18 | 0.01 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 5.17 | 0.69 | 0 | 0.02 | 0.13 | 0 | 0 | 0 | 0.06 | 0 | 0 | 0 | 0 |
| 90thp | 0.30 | 1.63 | 1.71 | 0.63 | 4.39 | 5.17 | 9.28 | 21.16 | 18.44 | 23.27 | 0.16 | 0.03 | 0.02 | 0.06 | 0 | 0 | 0.03 | 0 |
| Stdev | 0.27 | 1.62 | 1.61 | 1.61 | 2.91 | 0 | 3.53 | 9.65 | 12.24 | 10.70 | 1.98 | 0.01 | 0.03 | 0 | 0.18 | 0.01 | 1.24 | 0.12 |
| Prev(%) | 45.83 | 76.52 | 29.17 | 47.06 | 89.10 | 100.00 | 87.50 | 75.00 | 92.00 | 96.48 | 19.37 | 29.17 | 18.75 | 100.00 | 9.09 | 7.14 | 12.63 | 3.09 |
