HOMD ::Order:Neisseriales

Order: Neisseriales

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales
Lower rank member(s): [Family:Neisseriaceae]
Genera:

LINKS: Ecology Home | Life Page: Neisseriales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Neisseriales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	6.15	8.45	1.99	3.65	3.44	4.29	6.89	11.10	8.59	8.88	0.73	0.78	0.32	2.76	0.01	0.75	0.18	0.04
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	1.81	2.30	0.06	0.10	0.36	4.29	2.28	0.04	0.32	0.19	0.02	0.01	0	2.76	0	0	0	0
90^thp	13.24	17.07	6.52	8.90	8.36	4.29	11.95	26.75	23.07	23.88	0.82	0.48	0.68	2.76	0.02	1.84	0.11	0.02
Stdev	4.71	7.13	3.58	3.71	3.93	0	4.28	12.64	12.86	10.21	2.74	3.04	0.89	0	0.01	2.04	1.13	0.41
Prev(%)	95.83	99.49	58.33	73.33	77.09	100.00	87.50	71.43	77.27	94.80	4.62	4.35	10.00	0	0	12.50	2.13	1.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.38	8.68	2.48	3.37	4.67	4.91	6.22	6.62	9.93	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.05	1.64	0	0.27	0.41	0.57	0.16	0.16	0.08	0
90^thp	17.92	19.16	8.45	8.26	9.88	12.08	16.10	16.04	28.30	0
Stdev	8.24	7.89	4.78	4.06	4.59	5.00	8.54	8.26	11.38	0.03
Prev(%)	98.70	100.00	84.42	97.40	98.70	98.70	97.40	96.10	98.70	9.09

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.48	8.52	2.21	3.64	7.06	6.47	5.58	5.39	10.40	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.74	2.09	0	0.39	0.54	0.83	0.13	0.16	0.28	0
90^thp	12.84	18.60	7.18	8.01	19.49	14.32	14.13	15.53	27.17	0
Stdev	5.96	6.92	4.50	3.98	7.43	6.19	7.17	6.26	11.40	0
Prev(%)	99.32	100.00	87.84	99.32	99.32	99.32	98.65	96.62	98.65	2.80

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	8.37	10.34	3.56	4.51	5.74	5.10	7.51	6.58	9.15	1.90	1.52	1.85	0.98	1.12	0.11	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.36	3.00	0.03	0.38	0.52	0.47	0.20	0.16	0.12	0	0	0	0	0	0	0	0	0
90^thp	17.27	21.91	10.33	11.14	14.05	11.46	21.45	19.32	24.33	4.66	0.86	1.17	2.41	2.72	0.03	0	0	0
Stdev	7.74	8.44	5.30	4.58	6.39	5.51	11.45	9.02	9.77	5.56	8.76	9.75	2.45	2.90	0.56	0	0	0
Prev(%)	100.00	99.34	96.50	97.26	99.33	98.46	98.21	98.00	99.36	81.67	64.66	57.51	71.84	70.97	12.68	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.54	4.74	4.11	4.22	8.54	5.50	8.08	6.09	10.43	2.38	1.78	2.32	1.90	1.98	0	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.56	1.10	0.05	0.38	0.63	0.47	0.16	0.17	0.23	0	0	0	0	0	0	0	0	0
90^thp	7.33	10.22	12.30	8.91	21.10	14.26	21.17	17.83	26.44	6.35	1.73	2.93	4.61	5.35	0	0	0	0
Stdev	3.73	3.99	6.61	6.25	8.54	6.19	12.57	7.72	11.67	6.88	8.20	9.22	5.40	4.62	0.03	0	0.01	0.05
Prev(%)	99.75	99.76	92.84	98.76	98.47	99.41	96.26	98.05	98.30	69.35	61.15	70.37	79.31	72.67	2.87	0	1.57	8.27

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	3.16	2.20	3.41	3.40	7.85	5.85	4.54	3.71	6.98	0.76
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.19	0.03	0.07	0.76	0.09	0.08	0.07	0.11	0
90^thp	9.17	4.27	11.30	7.13	20.33	18.76	11.97	10.03	17.26	1.70
Stdev	5.66	3.80	8.08	5.24	9.57	8.18	6.65	4.85	9.98	1.58
Prev(%)	98.65	100.00	97.67	100.00	100.00	98.00	96.97	96.77	100.00	65.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	4.88	7.58	1.91	3.41	3.64	5.85	6.28	14.79	7.41	9.06	0.41	0.05	0.16	2.21	0.06	0.40	0.20	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.68	2.00	0	0	0.16	5.85	1.29	0	0.04	0.13	0	0	0	2.21	0	0	0	0
90^thp	10.64	14.77	5.74	9.24	8.43	5.85	10.89	33.28	18.52	23.57	0.28	0.21	0.11	2.21	0	0	0.06	0
Stdev	3.66	6.23	3.77	4.26	4.33	0	4.00	15.03	12.25	10.73	2.02	0.12	0.68	0	0.18	1.48	1.27	0.18
Prev(%)	100.00	99.75	87.50	82.35	95.48	100.00	87.50	81.25	92.00	96.95	22.52	45.83	28.13	100.00	9.09	7.14	14.65	3.46

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