HOMD ::Species:Patescibacteria [C1 O1 F1 G1] bacterium HMT-872

Species: Patescibacteria [C1 O1 F1 G1] bacterium HMT-872 (HMT-0872) Primary Body Site: Oral

Full Lineage: Bacteria; Patescibacteria; Patescibacteria [C1]; Patescibacteria [C1 O1]; Patescibacteria [C1 O1 F1]; Patescibacteria [C1 O1 F1 G1]; Patescibacteria [C1 O1 F1 G1] bacterium HMT-872

LINKS: Ecology Home | HMT-0872: [Body Sites Data] [Taxon Description] | Life Page: Patescibacteria [C1 O1 F1 G1] bacterium HMT-872

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Patescibacteria [C1 O1 F1 G1] bacterium HMT-872

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.16	0.19	0	0	0.01	0	0.05	0	0	0	0	0	0	0.01	0	0.06	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.56	0.63	0	0	0.03	0	0.13	0	0	0	0	0	0	0.01	0	0.15	0	0
Stdev	0.23	0.43	0.01	0	0.05	0	0.06	0	0	0.02	0	0	0.02	0	0	0.18	0	0
Prev(%)	45.83	39.24	0	0	2.48	0	0	0	0	1.18	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.15	0.17	0	0.01	0.01	0.05	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.56	0.47	0	0.02	0.02	0.15	0.01	0	0	0
Stdev	0.39	0.38	0	0.02	0.03	0.13	0.02	0.01	0.01	0
Prev(%)	37.66	41.56	2.60	15.58	15.58	40.26	10.39	6.49	3.90	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0.13	0	0.01	0	0.05	0	0	0	0	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0.36	0	0.01	0	0.15	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.21	0.37	0	0.04	0	0.15	0	0	0	0	0.11	0	0	0	0	0	0	0
Prev(%)	39.07	39.73	0	17.12	0	35.38	0	0	0	0	1.44	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.13	0	0	0	0.07	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.30	0.39	0	0	0	0.24	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.27	0.38	0	0	0	0.16	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	38.52	39.27	0	0	0	39.88	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.10	0.07	0	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.32	0	0.01	0.01	0	0	0	0	0
Stdev	0.62	0.18	0.01	0.01	0.02	0.01	0	0	0	0
Prev(%)	25.68	38.23	16.28	22.86	17.86	22.00	18.18	9.68	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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