HOMD ::Species:Porphyromonas gingivalis

Species: Porphyromonas gingivalis (HMT-0619) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas gingivalis

LINKS: Ecology Home | HMT-0619: [Body Sites Data] [Taxon Description] | Life Page: Porphyromonas gingivalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Porphyromonas gingivalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.01	3.06	0.01	0.01	0	0.01	0.01	0.02	0	0.01	0	0	0.40	0	0	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.01	0	0	0	0.01	0	0	0	0	0	0	0.40	0	0	0	0
90^thp	0.07	0.01	12.13	0.01	0.01	0	0.01	0.01	0.06	0.01	0	0.01	0	0.40	0	0	0	0.01
Stdev	0.03	0.04	6.26	0.01	0.06	0	0	0	0.02	0.01	0.06	0.01	0	0	0	0	0	0.01
Prev(%)	0	1.27	41.67	0	1.24	0	0	0	0	1.18	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.24	0.03	0	0	0	0.01	0	0.04	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	1.50	0.14	0	0.01	0	0.09	0.03	0.35	0	0
Prev(%)	3.90	5.20	0	2.60	1.30	5.20	3.90	3.90	1.30	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.23	0.04	0	0.01	0.01	0.04	0.02	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	1.32	0.32	0	0.08	0.04	0.27	0.17	0.40	0.01	0
Prev(%)	5.41	4.05	0.68	5.41	4.05	6.76	9.46	4.73	2.70	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	0	0	0	0	0.05	0.02	0	0.01	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.10	0	0	0	0	0.80	0.17	0	0.19	0.07	0	0	0	0	0	0	0
Prev(%)	0	1.99	0	0	0	0	2.98	3.33	0	1.00	1.44	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0.01	0	0	0	0	0.08	0.05	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.40	0.07	0	0	0	0	0.99	0.49	0	0	0	0	0	0	0	0	0	0
Prev(%)	2.47	2.19	0	0	0	0	3.43	2.43	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.38	0	0.01	0.03	0.03	0	0.01	0.05	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.02	0	0	0.02	0.01	0.01	0	0	0	0
Stdev	2.77	0.01	0.04	0.12	0.11	0.01	0.02	0.29	0.01	0
Prev(%)	18.92	17.65	16.28	22.86	21.43	20.00	15.15	6.45	7.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.01	3.12	0	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	11.97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0.05	6.49	0	0.09	0	0	0	0	0	0.02	0	0	0	0	0	0	0
Prev(%)	0	1.77	41.67	0	1.60	0	0	0	0	1.17	0.45	0	0	0	0	0	0	0

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