Species: Porphyromonas sp. HMT-275 (HMT-0275) Primary Body Site: Oral
Download Options
LINKS: Ecology Home
| HMT-0275: [Body Sites Data]
[Taxon Description]
| Life Page: Porphyromonas sp. HMT-275
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.03 | 0.04 | 0.01 | 0.05 | 0.02 | 0.02 | 0.06 | 0.03 | 0.03 | 0.02 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0.02 | 0.02 | 0 | 0.01 | 0 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 |
| 90thp | 0.06 | 0.06 | 0.03 | 0.14 | 0.05 | 0.02 | 0.10 | 0.06 | 0.07 | 0.05 | 0 | 0 | 0 | 0.01 | 0 | 0.01 | 0 | 0 |
| Stdev | 0.03 | 0.09 | 0.01 | 0.05 | 0.04 | 0 | 0.04 | 0.02 | 0.02 | 0.03 | 0 | 0 | 0 | 0 | 0 | 0.01 | 0.01 | 0 |
| Prev(%) | 4.17 | 6.33 | 0 | 0 | 1.24 | 0 | 0 | 0 | 0 | 1.42 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to P. sp. HMT 275 and P. sp. HMT 284 were assigned half to each taxon
reads equally close to P. sp. HMT 275 and P. sp. HMT 284 were assigned half to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.38 | 0.27 | 0.03 | 0.05 | 0.04 | 0.11 | 0.01 | 0.01 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.16 | 0.94 | 0.01 | 0.04 | 0.04 | 0.26 | 0.01 | 0.01 | 0.03 | 0 |
| Stdev | 0.72 | 0.45 | 0.13 | 0.24 | 0.20 | 0.26 | 0.02 | 0.04 | 0.02 | 0 |
| Prev(%) | 57.14 | 58.44 | 14.29 | 28.57 | 24.68 | 49.35 | 14.29 | 11.69 | 14.29 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.
Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.34 | 0.38 | 0.16 | 0.06 | 0.02 | 0.10 | 0.01 | 0.02 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.89 | 1.06 | 0.44 | 0.13 | 0.04 | 0.26 | 0.03 | 0.05 | 0.01 | 0 |
| Stdev | 0.47 | 0.46 | 0.35 | 0.17 | 0.04 | 0.12 | 0.03 | 0.06 | 0.01 | 0 |
| Prev(%) | 81.76 | 87.16 | 58.78 | 69.59 | 62.16 | 85.14 | 37.16 | 49.32 | 30.41 | 0.70 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-275 and HMT-278 were assigned to each taxon in proportion to the abundance of HMT-275 and HMT-278 individually at this body site (SUBP).
Reads equidistant to HMT-275 and HMT-278 were assigned to each taxon in proportion to the abundance of HMT-275 and HMT-278 individually at this body site (SUBP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.10 | 0.15 | 0.03 | 0.01 | 0.01 | 0.03 | 0.01 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.29 | 0.46 | 0.01 | 0.03 | 0.02 | 0.02 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0.30 | 0.42 | 0.22 | 0.07 | 0.03 | 0.19 | 0.14 | 0 | 0 | 0 | 0.14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 34.44 | 43.05 | 11.19 | 19.18 | 16.78 | 11.54 | 11.61 | 0 | 0 | 0 | 2.59 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 275, 277, and 278 were assigned one third to each taxon.
Reads equally close to HMT 275 and 278 were assigned half to each taxon.
Reads equally close to HMT 275, 277, and 278 were assigned one third to each taxon.
Reads equally close to HMT 275 and 278 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.18 | 0.10 | 0.02 | 0.02 | 0.05 | 0.04 | 0.01 | 0.01 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.32 | 0.35 | 0.04 | 0.02 | 0.07 | 0.13 | 0.02 | 0.02 | 0.01 | 0 |
| Stdev | 0.59 | 0.19 | 0.05 | 0.05 | 0.14 | 0.09 | 0.03 | 0.01 | 0.02 | 0 |
| Prev(%) | 54.05 | 79.41 | 46.51 | 57.14 | 60.71 | 56.00 | 45.45 | 41.94 | 35.00 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
