Species: Porphyromonas sp. HMT-277 (HMT-0277) Primary Body Site: Oral
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| HMT-0277: [Body Sites Data]
[Taxon Description]
| Life Page: Porphyromonas sp. HMT-277
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to P. sp. HMT 277 and P. sp. HMT 278 were assigned half to each taxon
reads equally close to P. sp. HMT 277 and P. sp. HMT 278 were assigned half to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.08 | 0.06 | 0 | 0.02 | 0 | 0.08 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.25 | 0.22 | 0 | 0.03 | 0.01 | 0.15 | 0 | 0 | 0 | 0 |
| Stdev | 0.17 | 0.14 | 0.02 | 0.12 | 0.01 | 0.32 | 0.01 | 0.01 | 0 | 0 |
| Prev(%) | 35.06 | 35.06 | 3.90 | 25.97 | 11.69 | 31.17 | 6.49 | 7.79 | 3.90 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.
Reads equally close to P. catoniae and P. sp. HMT 275, 277, and 284 were assigned one-fourth to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.34 | 0.38 | 0.16 | 0.06 | 0.02 | 0.10 | 0.01 | 0.02 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.89 | 1.06 | 0.44 | 0.13 | 0.04 | 0.26 | 0.03 | 0.05 | 0.01 | 0 |
| Stdev | 0.47 | 0.46 | 0.35 | 0.17 | 0.04 | 0.12 | 0.03 | 0.06 | 0.01 | 0 |
| Prev(%) | 81.76 | 87.16 | 58.78 | 69.59 | 62.16 | 85.14 | 37.16 | 49.32 | 30.41 | 0.70 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-277 and HMT-284 were assigned to each taxon in proportion to the abundance of HMT-277 and HMT-284 individually at these sites (SAL,SUBP,SUPP).
Reads equidistant to HMT-277 and HMT-284 were assigned to each taxon in proportion to the abundance of HMT-277 and HMT-284 individually at these sites (SAL,SUBP,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.03 | 0.03 | 0 | 0.01 | 0 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.05 | 0.03 | 0 | 0 | 0 | 0.04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0.09 | 0.12 | 0 | 0.03 | 0 | 0.07 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 23.18 | 23.18 | 0 | 8.90 | 0 | 20.77 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.06 | 0.06 | 0 | 0 | 0 | 0.04 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.05 | 0.03 | 0 | 0 | 0 | 0.03 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0.32 | 0.36 | 0 | 0 | 0 | 0.18 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 15.56 | 16.34 | 0 | 0 | 0 | 14.58 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 277 and 278 were assigned half to each taxon.
Reads equally close to HMT 275, 277, and 278 were assigned one third to each taxon.
Reads equally close to HMT 277 and 278 were assigned half to each taxon.
Reads equally close to HMT 275, 277, and 278 were assigned one third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.08 | 0.07 | 0.01 | 0.01 | 0.10 | 0.01 | 0.01 | 0.01 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.21 | 0.20 | 0.01 | 0.03 | 0.33 | 0.04 | 0.01 | 0.01 | 0 | 0 |
| Stdev | 0.26 | 0.13 | 0.03 | 0.02 | 0.27 | 0.02 | 0.02 | 0.03 | 0 | 0.02 |
| Prev(%) | 58.11 | 79.41 | 39.53 | 51.43 | 42.86 | 58.00 | 33.33 | 38.71 | 25.00 | 5.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
