HOMD ::Species:Prevotella melaninogenica

Species: Prevotella melaninogenica (HMT-0469) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella melaninogenica

LINKS: Ecology Home | HMT-0469: [Body Sites Data] [Taxon Description] | Life Page: Prevotella melaninogenica

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Prevotella melaninogenica

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.08	0.67	0.10	0.33	0.90	3.47	3.39	3.11	3.37	0.17	0.01	0.01	0.20	0	0.01	0.04	0.06
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.02	0	0.01	0	0.02	0.90	0.63	1.73	0.38	0.72	0	0	0	0.20	0	0	0	0
90^thp	0.45	0.19	1.14	0.27	0.79	0.90	7.05	4.93	7.14	6.88	0.26	0.02	0.01	0.20	0.01	0.03	0.04	0.07
Stdev	0.22	0.23	1.79	0.14	0.52	0	3.08	1.58	3.78	2.69	0.59	0.01	0.01	0	0.01	0.02	0.22	0.42
Prev(%)	41.67	40.51	37.50	40.00	49.23	100.00	100.00	100.00	90.91	99.53	3.08	0	0	0	0	12.50	1.06	1.07

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.35	0.08	0.14	0.53	3.05	3.57	3.15	2.53	4.44	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.04	0.41	0.89	0.45	0.33	1.07	0
90^thp	0.61	0.22	0.41	1.27	5.98	7.92	6.49	5.45	8.95	0
Stdev	1.32	0.15	0.28	0.85	2.59	3.13	2.92	2.31	3.48	0.01
Prev(%)	61.04	53.25	53.25	93.51	100.00	98.70	98.70	98.70	100.00	7.79

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to P. melaninogenica, P. scopos, and P. sp. HMT 313 and 314 were assigned one-fourth to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.12	0.05	0.05	0.19	0.87	1.02	0.99	0.76	1.32	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.01	0.09	0.23	0.10	0.06	0.13	0
90^thp	0.29	0.16	0.13	0.45	2.05	2.19	2.06	1.77	2.83	0
Stdev	0.34	0.10	0.16	0.30	0.93	0.93	1.05	0.86	1.22	0
Prev(%)	63.51	61.49	54.73	93.24	97.30	99.32	96.62	97.30	98.65	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Because HMT-314 is not present individually, all equidistant reads were assigned to HMT-469 at these sites (BMU,LAF,LRC,PTO,SAL,SUBP,SUPP,THR).

Some of the reads equidistant from these taxa (313-314-469) are included in HMT-469 because they are too close to differentiate at these sites (PTO,TDO).

Reads equidistant to HMT-313 and HMT-469 were assigned to each taxon in proportion to the abundance of HMT-313 and HMT-469 individually at this body site (TDO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.42	0.11	0.23	0.58	3.42	3.66	4.01	2.98	4.57	0.07	0.05	0.03	0.15	0.18	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.03	0.49	0.67	0.63	0.61	1.14	0	0	0	0	0	0	0	0	0
90^thp	0.97	0.25	0.60	1.57	7.51	7.84	8.31	6.31	9.09	0.11	0.07	0.05	0.41	0.40	0	0	0	0
Stdev	1.13	0.25	0.49	0.84	2.96	3.37	3.71	2.63	3.69	0.33	0.27	0.10	0.44	0.67	0	0	0	0
Prev(%)	80.13	72.19	72.73	92.47	99.33	95.39	98.51	100.00	100.00	36.33	25.57	23.51	32.18	31.34	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.14	0.19	1.71	1.34	5.01	3.99	6.28	4.69	7.07	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.02	0.10	0.11	1.03	0.36	0.04	0
90^thp	0.19	0.15	4.47	3.65	14.13	10.55	11.84	8.96	15.19	0
Stdev	0.47	0.79	4.29	1.82	5.78	4.33	5.43	3.99	6.61	0.04
Prev(%)	79.73	82.35	95.35	94.29	100.00	98.00	96.97	100.00	100.00	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.13	0.94	0.22	0.64	1.71	5.29	4.45	4.26	4.83	0.06	0	0	0	0.05	0	0.04	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	1.71	0.87	0.10	0.38	0.73	0	0	0	0	0	0	0	0
90^thp	0.60	0.37	1.73	0.73	1.74	1.71	11.26	8.21	11.21	10.13	0	0	0	0	0	0	0	0
Stdev	0.31	0.38	2.43	0.35	0.96	0	4.97	4.52	5.75	4.01	0.47	0.01	0.01	0	0.17	0.01	0.24	0.47
Prev(%)	75.00	60.61	70.83	52.94	83.51	100.00	100.00	93.75	96.00	99.06	4.96	4.17	3.13	0	9.09	7.14	5.05	1.64

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