HOMD ::Genus:Pseudoleptotrichia

Genus: Pseudoleptotrichia

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia
Lower rank member(s): [Species:Pseudoleptotrichia goodfellowii] [Species:Pseudoleptotrichia sp. HMT-212] [Species:Pseudoleptotrichia sp. HMT-215] [Species:Pseudoleptotrichia sp. HMT-217] [Species:Pseudoleptotrichia sp. HMT-219] [Species:Pseudoleptotrichia sp. HMT-392]

LINKS: Ecology Home | Life Page: Pseudoleptotrichia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Pseudoleptotrichia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.80	0.73	0.23	0.06	0.19	0.09	0.26	0.98	0.82	0.62	0.03	0.01	0.01	0.04	0	0.04	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.12	0.06	0.01	0.01	0.02	0.09	0.15	0.28	0.12	0.03	0	0	0	0.04	0	0	0	0
90^thp	1.50	1.75	0.60	0.17	0.44	0.09	0.36	1.75	1.75	1.50	0.03	0.01	0.01	0.04	0	0.09	0.01	0
Stdev	0.80	0.76	0.33	0.09	0.29	0	0.11	0.71	0.78	0.84	0.09	0.01	0.02	0	0	0.09	0.05	0.07
Prev(%)	79.17	87.85	37.50	40.00	29.10	100.00	37.50	100.00	77.27	86.05	3.08	0	0	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.30	1.53	0.12	0.26	0.31	0.43	0.55	0.81	0.53	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0.07	0	0.02	0.01	0	0	0	0	0
90^thp	2.73	4.02	0.19	0.66	0.75	0.79	1.40	2.12	1.45	0
Stdev	1.33	1.94	0.41	0.28	0.35	0.63	0.80	1.09	0.79	0.01
Prev(%)	92.21	93.51	50.65	92.21	89.61	87.01	83.12	87.01	85.71	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.02	1.31	0.07	0.25	0.23	0.39	0.41	0.64	0.43	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.12	0	0	0	0.04	0	0	0	0
90^thp	2.39	3.24	0.16	0.57	0.63	0.76	1.12	1.57	1.07	0
Stdev	1.19	1.43	0.26	0.32	0.28	0.38	0.47	0.77	0.61	0
Prev(%)	92.57	96.62	45.27	83.78	83.78	94.59	83.11	87.16	89.19	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.18	1.45	0.24	0.35	0.48	0.48	0.71	1.14	0.86	0.01	0.04	0.02	0.05	0.10	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.04	0.07	0	0	0	0	0	0.04	0.01	0	0	0	0	0	0	0	0	0
90^thp	2.52	3.95	0.47	0.82	0.98	1.04	1.92	2.90	2.20	0.03	0.02	0.02	0.09	0.08	0	0	0	0
Stdev	1.21	1.58	0.65	0.44	0.88	0.64	0.98	1.54	1.38	0.05	0.32	0.11	0.29	0.42	0	0	0	0
Prev(%)	94.70	96.03	68.53	89.04	83.89	84.61	83.04	92.67	92.26	20.00	16.38	12.75	17.24	13.82	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.53	1.77	0.34	0.64	0.73	0.67	1.06	1.38	1.01	0	0.09	0	0.26	0.24	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.12	0.10	0	0	0	0.03	0	0.06	0.02	0	0	0	0	0	0	0	0	0
90^thp	3.38	4.16	0.86	1.50	1.94	1.54	3.06	3.22	2.49	0	0.09	0	0.67	0.46	0	0	0	0
Stdev	1.54	1.81	0.84	0.79	0.94	0.65	1.40	1.75	1.37	0	0.36	0	0.93	0.98	0	0	0	0
Prev(%)	97.28	98.05	62.47	89.08	85.17	92.26	85.36	94.65	91.48	0	20.06	0	28.28	28.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.98	1.55	0.40	0.47	0.84	0.78	1.15	1.02	1.47	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.10	0	0.01	0.01	0.03	0.03	0.01	0.01	0
90^thp	2.44	3.20	0.96	1.25	1.25	1.77	2.21	1.12	2.90	0.02
Stdev	2.22	1.88	0.56	0.60	2.11	1.18	2.52	2.34	3.69	0.01
Prev(%)	98.65	100.00	95.35	97.14	96.43	98.00	100.00	96.77	95.00	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.31	0.04	0.07	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.68	0.09	0.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.76	0.10	0.26	0.08	0.01	0	0	0	0.01	0	0	0	0	0	0	0	0	0
Prev(%)	50.00	31.31	12.50	5.88	2.13	0	0	0	8.00	0.47	0	0	0	0	0	0	0	0

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