HOMD ::Species:Pseudoleptotrichia sp. HMT-219

Species: Pseudoleptotrichia sp. HMT-219 (HMT-0219) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Pseudoleptotrichia; Pseudoleptotrichia sp. HMT-219

LINKS: Ecology Home | HMT-0219: [Body Sites Data] [Taxon Description] | Life Page: Pseudoleptotrichia sp. HMT-219

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Pseudoleptotrichia sp. HMT-219

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.09	0.13	0.02	0.02	0.01	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.24	0	0.04	0	0.04	0	0	0	0
Stdev	0.21	0.46	0.21	0.08	0.05	0.05	0.01	0.01	0	0
Prev(%)	35.06	40.26	3.90	23.38	6.49	18.18	9.09	3.90	3.90	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.14	0.01	0.01	0	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.39	0.35	0	0.04	0	0.08	0	0	0	0
Stdev	0.37	0.43	0.16	0.04	0.01	0.05	0.02	0.01	0.01	0
Prev(%)	35.13	45.27	2.70	18.24	7.43	27.70	4.73	6.08	6.76	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0.14	0.03	0.03	0	0.01	0	0	0	0	0	0	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.23	0.33	0.01	0.07	0	0.05	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.18	0.42	0.25	0.08	0	0.04	0	0	0	0	0	0	0.09	0	0	0	0	0
Prev(%)	45.03	49.01	13.29	32.19	0	22.31	0	0	0	0	0	0	1.15	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.17	0.02	0.04	0	0.04	0.01	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.41	0.44	0	0.12	0	0.11	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.36	0.46	0.19	0.13	0	0.13	0.07	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	45.19	48.54	9.88	27.54	0	30.66	7.79	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.16	0.09	0	0.01	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.18	0.24	0.01	0.03	0.01	0.01	0	0	0	0
Stdev	0.86	0.16	0.01	0.02	0.01	0	0	0	0	0
Prev(%)	44.59	61.77	34.88	51.43	25.00	30.00	15.15	6.45	12.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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