HOMD ::Species:Simonsiella muelleri

Species: Simonsiella muelleri (HMT-0683) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Simonsiella; Simonsiella muelleri

LINKS: Ecology Home | HMT-0683: [Body Sites Data] [Taxon Description] | Life Page: Simonsiella muelleri

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Simonsiella muelleri

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.05	0.01	0.01	0.03	0.01	0.01	0.01	0	0.07	0.01	0.01	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0	0.01	0	0.18	0.01	0.01	0.06	0.02	0.01	0.02	0	0	0	0.01	0	0	0	0
Stdev	0	0	0	0.09	0.01	0	0.03	0.01	0	0.02	0.01	0.35	0.02	0	0	0	0	0
Prev(%)	0	0	0	13.33	0	0	0	0	0	3.55	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0.12	0	0.47	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	1.23	0	0	0	0	0
Stdev	0	0	1.03	0.01	1.74	0.03	0.03	0.02	0	0
Prev(%)	1.30	1.30	7.79	6.49	16.88	3.90	1.30	6.49	0	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. muelleri and Kingella sp. HMT 459 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.17	0.27	0.02	0.02	1.24	0.03	0.03	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.44	0.70	0.01	0.06	3.25	0.08	0.04	0.02	0	0
Stdev	0.37	0.69	0.12	0.05	4.38	0.06	0.20	0.17	0.01	0
Prev(%)	55.41	66.22	13.51	37.16	41.89	35.13	22.97	20.95	9.46	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.01	0	0.57	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	1.65	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0.03	0	1.90	0	0.02	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	7.69	0	21.48	0	5.36	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.33	0	1.25	0	0	0	0	0	0.02	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.09	0	3.43	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	2.44	0	4.00	0	0	0	0	0	0.28	0	0	0	0	0	0	0
Prev(%)	0	0	16.54	0	29.41	0	0	0	0	0	1.59	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0.01	0	1.56	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.01	0	3.31	0	0.01	0	0	0
Stdev	0	0	0.03	0	4.62	0	0.01	0	0.01	0
Prev(%)	1.35	2.94	16.28	17.14	25.00	10.00	21.21	22.58	7.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.02	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.03	0	0	0.05	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.06	0.01	0	0.02	0	0	0.03	0	0	0	0	0	0	0	0
Prev(%)	0	0.25	0	11.77	2.39	0	25.00	0	0	4.70	0	0	0	0	0	0	0	0

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