HOMD ::Species:Tannerella serpentiformis

Species: Tannerella serpentiformis (HMT-0286) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Tannerella; Tannerella serpentiformis

LINKS: Ecology Home | HMT-0286: [Body Sites Data] [Taxon Description] | Life Page: Tannerella serpentiformis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Tannerella serpentiformis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.34	0.30	0.77	0.01	0.07	0	0.06	0.28	0.29	0.12	0.01	0	0	0.02	0	0.02	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0	0.01	0	0	0	0.03	0.01	0.01	0	0	0	0	0.02	0	0	0	0
90^thp	0.99	0.93	1.91	0.02	0.13	0	0.10	0.74	0.79	0.35	0.01	0.01	0	0.02	0	0.06	0	0.04
Stdev	0.46	0.55	1.63	0.03	0.21	0	0.04	0.66	0.68	0.28	0.02	0.01	0	0	0	0.05	0.03	0.02
Prev(%)	54.17	53.92	50.00	0	8.36	0	0	28.57	31.82	44.68	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.11	0	0.04	0.02	0.04	0.16	0.20	0.10	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.36	0.37	0	0.09	0.08	0.10	0.53	0.59	0.42	0
Stdev	0.34	0.24	0.01	0.12	0.04	0.19	0.39	0.47	0.21	0
Prev(%)	44.16	40.26	10.39	37.66	25.97	29.87	40.26	45.45	32.47	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to T. sp. HMT 286 and 916 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.14	0.15	0.01	0.02	0.02	0.04	0.07	0.10	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.29	0.48	0	0.05	0.06	0.12	0.22	0.29	0.08	0
Stdev	0.28	0.21	0.02	0.04	0.06	0.05	0.18	0.21	0.19	0
Prev(%)	69.59	66.22	10.13	46.62	41.22	64.19	53.38	60.13	37.84	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.15	0	0.04	0.03	0.07	0.17	0.18	0.08	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.48	0.40	0	0.10	0.10	0.13	0.43	0.53	0.30	0	0	0	0	0	0	0	0	0
Stdev	0.45	0.36	0	0.12	0.05	0.21	0.41	0.34	0.17	0	0	0	0	0	0	0	0	0
Prev(%)	60.27	57.62	0	45.20	40.94	43.08	47.62	62.00	51.61	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-286 and HMT-808 were assigned to each taxon in proportion to the abundance of HMT-286 and HMT-808 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.29	0.21	0.03	0.08	0.06	0.09	0.23	0.22	0.09	0	0.03	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.78	0.63	0.04	0.19	0.17	0.22	0.71	0.62	0.24	0	0	0	0	0	0	0	0	0
Stdev	0.55	0.42	0.18	0.19	0.13	0.13	0.51	0.46	0.22	0	0.20	0	0	0	0	0	0	0
Prev(%)	71.61	62.44	15.80	45.16	38.36	64.88	49.22	64.23	45.98	0	7.01	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.11	0.52	0.21	0.08	0.06	0.07	0.10	0.11	0.10	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.30	1.41	0.10	0.14	0.12	0.19	0.25	0.14	0.15	0
Stdev	0.22	0.82	0.95	0.21	0.14	0.14	0.25	0.41	0.33	0
Prev(%)	72.97	85.29	67.44	71.43	57.14	74.00	69.70	64.52	60.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.28	0.32	0.84	0.01	0.08	0	0.03	0.94	0.36	0.14	0	0	0	0	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.97	1.02	2.04	0.01	0.16	0	0.07	4.11	0.99	0.41	0	0	0	0	0	0	0	0
Stdev	0.45	0.58	1.85	0.03	0.35	0	0.04	2.26	0.79	0.35	0.03	0	0	0	0	0.04	0.02	0
Prev(%)	58.33	62.63	58.33	11.77	30.32	0	50.00	37.50	40.00	51.64	1.35	0	0	0	0	7.14	0.51	0.18

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