HOMD ::Species:Treponema denticola

Species: Treponema denticola (HMT-0584) Primary Body Site: Oral

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Full Lineage: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema denticola

LINKS: Ecology Home | HMT-0584: [Body Sites Data] [Taxon Description] | Life Page: Treponema denticola

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Treponema denticola

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.22	0.05	1.24	0	0.01	0	0.03	0	0.06	0	0	0	0	0.01	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.68	0.08	3.29	0	0.01	0	0.07	0	0.18	0.01	0	0	0	0.01	0	0	0	0
Stdev	0.38	0.32	1.90	0	0.02	0	0.05	0	0.08	0.01	0.02	0	0	0	0	0	0	0
Prev(%)	37.50	15.19	58.33	0	0.62	0	0	0	18.18	1.89	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.30	0.05	0	0	0	0.04	0.03	0.18	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.61	0.04	0	0	0	0.05	0	0.09	0	0
Stdev	1.04	0.19	0	0.02	0.01	0.16	0.16	0.97	0.01	0
Prev(%)	27.27	14.29	1.30	7.79	5.20	25.97	9.09	29.87	1.30	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.57	0.12	0.01	0.01	0.01	0.06	0.05	0.16	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.73	0.17	0	0.03	0.01	0.16	0.07	0.22	0	0
Stdev	1.76	0.66	0.07	0.03	0.02	0.19	0.26	1.03	0.02	0
Prev(%)	36.49	19.59	2.03	17.57	10.13	32.43	20.95	29.05	8.11	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0	0	0	0	0	0	0.15	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0	0	0	0	0	0	0.10	0	0	0	0	0	0	0	0	0	0
Stdev	0.47	0	0	0	0	0	0	0.78	0	0	0	0	0	0	0	0	0	0
Prev(%)	27.82	0	0	0	0	0	0	31.33	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.26	0.04	0	0	0	0.05	0.07	0.25	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.85	0.04	0	0	0	0.14	0.09	0.42	0	0	0	0	0	0	0	0	0	0
Stdev	0.79	0.27	0	0	0	0.17	0.31	1.05	0	0	0	0	0	0	0	0	0	0
Prev(%)	34.07	16.34	0	0	0	32.14	20.25	35.04	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.19	0.01	0	0.01	0	0	0.01	0.09	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.20	0.01	0	0.02	0	0.01	0.01	0.03	0	0
Stdev	0.78	0.05	0	0.05	0.01	0.01	0.01	0.33	0	0
Prev(%)	33.78	26.47	16.28	28.57	14.29	34.00	39.39	25.81	10.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.18	0.04	0.42	0	0	0	0.02	0.02	0.04	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.64	0.06	1.50	0	0	0	0.04	0	0.17	0	0	0	0	0	0	0	0	0
Stdev	0.36	0.21	0.77	0	0.01	0	0.05	0.09	0.07	0.01	0	0	0	0	0	0	0	0
Prev(%)	37.50	17.42	54.17	0	1.06	0	12.50	6.25	28.00	2.35	0	0	0	0	0	0	0	0.18

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