HOMD ::Family:Treponemataceae

Family: Treponemataceae

Full Lineage: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae
Lower rank member(s): [Genus:Treponema]

LINKS: Ecology Home | Life Page: Treponemataceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Family: Treponemataceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.54	0.45	5.07	0.01	0.04	0.01	0.23	0.03	0.68	0.06	0.01	0	0	0.04	0	0	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.07	0	0.38	0	0	0.01	0.10	0.01	0.01	0	0	0	0	0.04	0	0	0	0
90^thp	7.61	1.31	10.68	0.02	0.10	0.01	0.36	0.05	2.35	0.15	0.02	0.02	0	0.04	0	0	0	0.03
Stdev	3.82	1.14	5.41	0.03	0.12	0	0.13	0.02	0.94	0.12	0.04	0.01	0	0	0	0	0	0.02
Prev(%)	70.83	45.32	91.67	0	1.86	0	0	0	50.00	18.44	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.91	0.56	0	0.06	0.04	0.24	0.18	0.71	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	6.05	1.80	0	0.13	0.13	0.44	0.41	1.20	0.17	0
Stdev	3.64	1.42	0.01	0.14	0.08	0.75	0.50	2.10	0.11	0
Prev(%)	72.73	49.35	6.49	37.66	38.96	64.94	50.65	80.52	40.26	2.60

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.63	1.06	0.02	0.14	0.06	0.50	0.23	0.69	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	10.37	2.39	0.02	0.43	0.14	1.18	0.45	1.77	0.18	0
Stdev	6.34	2.61	0.10	0.46	0.14	1.02	0.80	1.87	0.13	0
Prev(%)	85.14	72.97	12.16	55.41	41.89	79.73	64.19	72.30	40.54	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.09	0.19	0	0	0.02	0	0.11	0.60	0.03	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.24	0.56	0	0	0.07	0	0.27	1.41	0.13	0	0	0	0	0	0	0	0	0
Stdev	1.88	0.47	0	0	0.04	0	0.31	1.61	0.08	0	0	0	0	0.11	0	0	0	0
Prev(%)	76.82	54.97	0	0	26.85	0	47.02	84.00	39.35	0	0	0	0	1.38	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.15	0.37	0	0	0	0.28	0.23	1.01	0.05	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	5.75	1.13	0	0	0	0.69	0.50	2.29	0.14	0	0	0	0	0	0	0	0	0
Stdev	3.41	0.96	0	0	0	0.63	0.73	2.46	0.16	0	0	0	0	0	0	0	0	0
Prev(%)	80.99	59.27	0	0	0	72.32	50.47	82.00	36.50	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.37	0.23	0.03	0.10	0.03	0.02	0.06	0.33	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	3.99	0.49	0.07	0.28	0.07	0.05	0.10	0.42	0.02	0
Stdev	3.44	0.50	0.05	0.27	0.07	0.02	0.13	0.87	0.03	0
Prev(%)	79.73	76.47	55.81	62.86	60.71	70.00	87.88	77.42	47.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.52	0.42	4.36	0	0.02	0.03	0.12	0.82	0.71	0.10	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0	0.36	0	0	0.03	0	0	0.01	0	0	0	0	0	0	0	0	0
90^thp	7.19	1.28	8.42	0	0.01	0.03	0.30	0.85	2.16	0.28	0	0	0	0	0	0	0	0
Stdev	3.94	1.08	4.94	0	0.13	0	0.14	2.78	0.97	0.25	0	0	0	0	0	0	0	0
Prev(%)	91.67	57.32	100.00	0	10.90	100.00	62.50	37.50	88.00	41.78	0.45	0	0	0	0	0	0	0.18

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