HOMD ::species::Lactobacillus crispatus

Species: Lactobacillus crispatus (HMT-817)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus crispatus

LINKS: Ecology Home | HMT-817: Body Sites Data | HMT-817: Taxon Description | Life Page: Lactobacillus crispatus

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.011	0.000	0.074	0.000	0.040	0.000	0.000	0.056	0.328	0.034	0.044	0.337	0.464	42.180	45.015	46.150	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.045	0.000	0.060	0.000	0.112	0.000	0.000	0.019	0.087	0.052	0.047	0.784	1.555	96.338	97.949	99.054	0.000
Stdev	0.000	0.028	0.000	0.539	0.000	0.128	0.000	0.000	0.511	3.450	0.135	0.238	1.200	1.376	43.061	45.258	46.194	0.000
Prev(%)	0.000	21.854	0.000	31.507	0.000	27.692	0.000	0.000	20.645	27.000	21.839	18.697	29.885	27.650	70.423	67.568	67.105	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
Neither HMT-529 nor HMT-817 were present singularly so these reads were split evenly at these sites (ANA,LAF,RRC,SUBP,SUPP).

Because HMT-529 is not present individually, all equidistant reads were assigned to HMT-817 at these sites (LRC,MVA,PFO,RAF,VIN).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.010	0.012	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.230	0.302	0.263	0.504	0.599	44.453	50.249	50.460	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.010	0.009	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.096	0.117	0.059	0.559	1.435	97.464	99.140	99.623	0.000
Stdev	0.076	0.110	0.000	0.000	0.000	0.000	0.000	0.000	0.000	2.405	2.487	2.831	3.073	1.742	42.594	45.379	45.914	0.000
Prev(%)	15.556	14.390	0.000	0.000	0.000	0.000	0.000	0.000	0.000	29.885	21.656	23.148	40.000	42.000	73.563	68.852	68.586	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.000	0.000	0.000	0.000	0.003	0.001	0.001	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.001	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.001	0.001	0.013	0.007	0.003	0.000	0.000	0.000
Prev(%)	1.351	0.000	2.326	5.714	10.714	4.000	6.061	0.000	0.000	0.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.251	0.001	0.096	0.011	0.000	0.000	0.000	0.000	0.002	0.433	0.052	0.038	3.720	54.910	57.026	47.596	0.003
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	3.720	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.020	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.029	3.720	99.140	98.504	99.816	0.000
Stdev	0.000	4.982	0.006	0.385	0.189	0.000	0.000	0.000	0.002	0.031	5.151	0.235	0.184	0.000	41.827	44.796	46.476	0.059
Prev(%)	0.000	1.010	4.167	11.765	1.862	0.000	0.000	0.000	4.000	0.235	5.856	8.333	15.625	100.000	81.818	71.429	58.586	1.455

Eren V1-V3 www.pnas.org

No Notes

Eren V3-V5 www.pnas.org

No Notes

Copyright 2007-2025, The Forsyth Institute
Hosted on Amazon AWS EC2