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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.01   |  Genomic RefSeq: V11.01
Species: Lactobacillus johnsonii (HMT-819)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus johnsonii
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes

HMP 16S RefSeq (V3-V5) (not published)
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Notes:
Neither HMT-615 nor HMT-819 were present singularly so these reads were split evenly at these sites (MVA,PFO,PTO,SUBP,VIN).

SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0130.0000.0000.0000.0000.0000.0000.0070.0000.0000.0000.0000.0000.0003.6743.4953.5780.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0008.7944.5047.2680.000
Stdev0.2310.0000.0000.0000.0000.0000.0000.1140.0000.0000.0000.0000.0000.00010.49010.89311.3630.000
Prev(%)4.1980.0000.0000.0000.0000.0000.0004.3800.0000.0000.0000.0000.0000.00069.54047.54145.0260.000

Dewhirst (35x9) (not published)
No Notes

HMP Metaphlan (not published)
No Notes

Eren V1-V3 www.pnas.org
No Notes

Eren V3-V5 www.pnas.org
No Notes