PROKKAGenome Explorer: Variovorax paradoxus (GCA_000184745.1)
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PROKKA Annotations for GCA_000184745.1
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Notes: 1- Column headers only sort the current page. 2- Select [NA] or [AA] links to show sequences.
| Region | Protein-ID | Type | Genome Viewer |
Range (bp) |
Show Sequences (length) NA / AA |
PROKKA Gene |
PROKKA GeneProduct |
|
|---|---|---|---|---|---|---|---|---|
| 6001 | CP002417.1 | GCA_000184745.1_06001 | CDS | open | 6442484-6442969 | 486_na 161_aa | hypothetical protein | |
| 6002 | CP002417.1 | GCA_000184745.1_06002 | CDS | open | 6443032-6443706 | 675_na 224_aa | tctD_4 | Transcriptional regulatory protein tctD |
| 6003 | CP002417.1 | GCA_000184745.1_06003 | CDS | open | 6443734-6444690 | 957_na 318_aa | hypothetical protein | |
| 6004 | CP002417.1 | GCA_000184745.1_06004 | CDS | open | 6444837-6446279 | 1443_na 480_aa | sasA_24 | Adaptive-response sensory-kinase SasA |
| 6005 | CP002417.1 | GCA_000184745.1_06005 | CDS | open | 6446276-6447019 | 744_na 247_aa | hypothetical protein | |
| 6006 | CP002417.1 | GCA_000184745.1_06006 | CDS | open | 6447035-6447232 | 198_na 65_aa | hypothetical protein | |
| 6007 | CP002417.1 | GCA_000184745.1_06007 | CDS | open | 6447244-6448056 | 813_na 270_aa | birA | Bifunctional ligaserepressor BirA |
| 6008 | CP002417.1 | GCA_000184745.1_06008 | CDS | open | 6448058-6448675 | 618_na 205_aa | hypothetical protein | |
| 6009 | CP002417.1 | GCA_000184745.1_06009 | CDS | open | 6448765-6451734 | 2970_na 989_aa | topB | DNA topoisomerase 3 |
| 6010 | CP002417.1 | GCA_000184745.1_06010 | CDS | open | 6451981-6452166 | 186_na 61_aa | hypothetical protein | |
| 6011 | CP002417.1 | GCA_000184745.1_06011 | CDS | open | 6452177-6453058 | 882_na 293_aa | puuD | Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD |
| 6012 | CP002417.1 | GCA_000184745.1_06012 | CDS | open | 6453272-6454327 | 1056_na 351_aa | iolE_2 | Inosose dehydratase |
| 6013 | CP002417.1 | GCA_000184745.1_06013 | CDS | open | 6454335-6455420 | 1086_na 361_aa | hypothetical protein | |
| 6014 | CP002417.1 | GCA_000184745.1_06014 | CDS | open | 6455523-6456980 | 1458_na 485_aa | gabR_4 | HTH-type transcriptional regulatory protein GabR |
| 6015 | CP002417.1 | GCA_000184745.1_06015 | CDS | open | 6457063-6458322 | 1260_na 419_aa | pbuE_2 | Purine efflux pump PbuE |
| 6016 | CP002417.1 | GCA_000184745.1_06016 | CDS | open | 6458712-6458963 | 252_na 83_aa | hypothetical protein | |
| 6017 | CP002417.1 | GCA_000184745.1_06017 | CDS | open | 6459024-6459293 | 270_na 89_aa | infA | Translation initiation factor IF-1 |
| 6018 | CP002417.1 | GCA_000184745.1_06018 | CDS | open | 6459379-6460830 | 1452_na 483_aa | dbpA_2 | ATP-dependent RNA helicase DbpA |
| 6019 | CP002417.1 | GCA_000184745.1_06019 | CDS | open | 6460796-6462292 | 1497_na 498_aa | hypothetical protein | |
| 6020 | CP002417.1 | GCA_000184745.1_06020 | CDS | open | 6462352-6462522 | 171_na 56_aa | hypothetical protein | |
| 6021 | CP002417.1 | GCA_000184745.1_06021 | CDS | open | 6462608-6462928 | 321_na 106_aa | hypothetical protein | |
| 6022 | CP002417.1 | GCA_000184745.1_06022 | CDS | open | 6463013-6463903 | 891_na 296_aa | hypothetical protein | |
| 6023 | CP002417.1 | GCA_000184745.1_06023 | CDS | open | 6463908-6464843 | 936_na 311_aa | hypothetical protein | |
| 6024 | CP002417.1 | GCA_000184745.1_06024 | CDS | open | 6464905-6465597 | 693_na 230_aa | hypothetical protein | |
| 6025 | CP002417.1 | GCA_000184745.1_06025 | CDS | open | 6465594-6466877 | 1284_na 427_aa | hcnB_2 | Hydrogen cyanide synthase subunit HcnB |
| 6026 | CP002417.1 | GCA_000184745.1_06026 | CDS | open | 6466874-6467122 | 249_na 82_aa | hcnA_2 | Hydrogen cyanide synthase subunit HcnA |
| 6027 | CP002417.1 | GCA_000184745.1_06027 | CDS | open | 6467119-6468222 | 1104_na 367_aa | thiO | Glycine oxidase |
| 6028 | CP002417.1 | GCA_000184745.1_06028 | CDS | open | 6468372-6469307 | 936_na 311_aa | 4-hydroxyproline 2-epimerase | |
| 6029 | CP002417.1 | GCA_000184745.1_06029 | CDS | open | 6469322-6470464 | 1143_na 380_aa | braC_9 | Leucine-%2C isoleucine-%2C valine-%2C threonine-%2C and alanine-binding protein |
| 6030 | CP002417.1 | GCA_000184745.1_06030 | CDS | open | 6470502-6471416 | 915_na 304_aa | dapA_4 | 4-hydroxy-tetrahydrodipicolinate synthase |
| 6031 | CP002417.1 | GCA_000184745.1_06031 | CDS | open | 6471545-6472873 | 1329_na 442_aa | hipA_3 | Serinethreonine-protein kinase toxin HipA |
| 6032 | CP002417.1 | GCA_000184745.1_06032 | CDS | open | 6472873-6473400 | 528_na 175_aa | hypothetical protein | |
| 6033 | CP002417.1 | GCA_000184745.1_06033 | CDS | open | 6473521-6474468 | 948_na 315_aa | hypothetical protein | |
| 6034 | CP002417.1 | GCA_000184745.1_06034 | CDS | open | 6474540-6475745 | 1206_na 401_aa | hipO_4 | Hippurate hydrolase |
| 6035 | CP002417.1 | GCA_000184745.1_06035 | CDS | open | 6475842-6476687 | 846_na 281_aa | hypothetical protein | |
| 6036 | CP002417.1 | GCA_000184745.1_06036 | CDS | open | 6476684-6477271 | 588_na 195_aa | hypothetical protein | |
| 6037 | CP002417.1 | GCA_000184745.1_06037 | CDS | open | 6477398-6478327 | 930_na 309_aa | dmlR_31 | HTH-type transcriptional regulator DmlR |
| 6038 | CP002417.1 | GCA_000184745.1_06038 | CDS | open | 6478365-6478841 | 477_na 158_aa | slyD_2 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD |
| 6039 | CP002417.1 | GCA_000184745.1_06039 | CDS | open | 6478851-6480479 | 1629_na 542_aa | hypothetical protein | |
| 6040 | CP002417.1 | GCA_000184745.1_06040 | CDS | open | 6480652-6481074 | 423_na 140_aa | hypothetical protein | |
| 6041 | CP002417.1 | GCA_000184745.1_06041 | CDS | open | 6481229-6482287 | 1059_na 352_aa | hypothetical protein | |
| 6042 | CP002417.1 | GCA_000184745.1_06042 | CDS | open | 6482412-6482702 | 291_na 96_aa | hypothetical protein | |
| 6043 | CP002417.1 | GCA_000184745.1_06043 | CDS | open | 6482801-6483811 | 1011_na 336_aa | hypothetical protein | |
| 6044 | CP002417.1 | GCA_000184745.1_06044 | CDS | open | 6483897-6484988 | 1092_na 363_aa | ttuC | putative tartrate dehydrogenasedecarboxylase TtuC |
| 6045 | CP002417.1 | GCA_000184745.1_06045 | CDS | open | 6485104-6486024 | 921_na 306_aa | dmlR_32 | HTH-type transcriptional regulator DmlR |
| 6046 | CP002417.1 | GCA_000184745.1_06046 | CDS | open | 6486111-6487178 | 1068_na 355_aa | prtS | Protease PrtS |
| 6047 | CP002417.1 | GCA_000184745.1_06047 | CDS | open | 6487175-6487510 | 336_na 111_aa | hypothetical protein | |
| 6048 | CP002417.1 | GCA_000184745.1_06048 | CDS | open | 6487514-6488842 | 1329_na 442_aa | mntH | Divalent metal cation transporter MntH |
| 6049 | CP002417.1 | GCA_000184745.1_06049 | CDS | open | 6488969-6489277 | 309_na 102_aa | ygiN | putative quinol monooxygenase YgiN |
| 6050 | CP002417.1 | GCA_000184745.1_06050 | CDS | open | 6489370-6489975 | 606_na 201_aa | hypothetical protein | |
| 6051 | CP002417.1 | GCA_000184745.1_06051 | CDS | open | 6489991-6490590 | 600_na 199_aa | hypothetical protein | |
| 6052 | CP002417.1 | GCA_000184745.1_06052 | CDS | open | 6490664-6491665 | 1002_na 333_aa | gapA | Glyceraldehyde-3-phosphate dehydrogenase A |
| 6053 | CP002417.1 | GCA_000184745.1_06053 | CDS | open | 6491726-6493840 | 2115_na 704_aa | tktA | Transketolase 1 |
| 6054 | CP002417.1 | GCA_000184745.1_06054 | CDS | open | 6493988-6494368 | 381_na 126_aa | speH | S-adenosylmethionine decarboxylase proenzyme |
| 6055 | CP002417.1 | GCA_000184745.1_06055 | CDS | open | 6494392-6495105 | 714_na 237_aa | murU | N-acetylmuramate alpha-1-phosphate uridylyltransferase |
| 6056 | CP002417.1 | GCA_000184745.1_06056 | CDS | open | 6495102-6496499 | 1398_na 465_aa | pepP | Xaa-Pro aminopeptidase |
| 6057 | CP002417.1 | GCA_000184745.1_06057 | CDS | open | 6496682-6497266 | 585_na 194_aa | hypothetical protein | |
| 6058 | CP002417.1 | GCA_000184745.1_06058 | CDS | open | 6497289-6497654 | 366_na 121_aa | hypothetical protein | |
| 6059 | CP002417.1 | GCA_000184745.1_06059 | CDS | open | 6497714-6499066 | 1353_na 450_aa | hypothetical protein | |
| 6060 | CP002417.1 | GCA_000184745.1_06060 | CDS | open | 6499262-6501520 | 2259_na 752_aa | pbpC_2 | Penicillin-binding protein 1C |
| 6061 | CP002417.1 | GCA_000184745.1_06061 | CDS | open | 6501717-6507734 | 6018_na 2005_aa | yfhM | Alpha-2-macroglobulin |
| 6062 | CP002417.1 | GCA_000184745.1_06062 | CDS | open | 6507856-6508332 | 477_na 158_aa | hypothetical protein | |
| 6063 | CP002417.1 | GCA_000184745.1_06063 | CDS | open | 6508329-6508706 | 378_na 125_aa | hypothetical protein | |
| 6064 | CP002417.1 | GCA_000184745.1_06064 | CDS | open | 6508703-6509821 | 1119_na 372_aa | hypothetical protein | |
| 6065 | CP002417.1 | GCA_000184745.1_06065 | CDS | open | 6509818-6511449 | 1632_na 543_aa | hypothetical protein | |
| 6066 | CP002417.1 | GCA_000184745.1_06066 | CDS | open | 6511457-6513016 | 1560_na 519_aa | speE_2 | Polyamine aminopropyltransferase |
| 6067 | CP002417.1 | GCA_000184745.1_06067 | CDS | open | 6513013-6513231 | 219_na 72_aa | hypothetical protein | |
| 6068 | CP002417.1 | GCA_000184745.1_06068 | CDS | open | 6513277-6514764 | 1488_na 495_aa | hypothetical protein | |
| 6069 | CP002417.1 | GCA_000184745.1_06069 | CDS | open | 6514892-6515941 | 1050_na 349_aa | hypothetical protein | |
| 6070 | CP002417.1 | GCA_000184745.1_06070 | CDS | open | 6516113-6518461 | 2349_na 782_aa | maeB_2 | NADP-dependent malic enzyme |
| 6071 | CP002417.1 | GCA_000184745.1_06071 | CDS | open | 6518645-6519058 | 414_na 137_aa | hypothetical protein | |
| 6072 | CP002417.1 | GCA_000184745.1_06072 | CDS | open | 6519055-6519534 | 480_na 159_aa | hypothetical protein | |
| 6073 | CP002417.1 | GCA_000184745.1_06073 | CDS | open | 6519804-6520568 | 765_na 254_aa | rsmA | Ribosomal RNA small subunit methyltransferase A |
| 6074 | CP002417.1 | GCA_000184745.1_06074 | CDS | open | 6520572-6521981 | 1410_na 469_aa | surA | Chaperone SurA |
| 6075 | CP002417.1 | GCA_000184745.1_06075 | CDS | open | 6522003-6524618 | 2616_na 871_aa | lptD | LPS-assembly protein LptD |
| 6076 | CP002417.1 | GCA_000184745.1_06076 | CDS | open | 6524856-6525953 | 1098_na 365_aa | amgK | N-acetylmuramateN-acetylglucosamine kinase |
| 6077 | CP002417.1 | GCA_000184745.1_06077 | CDS | open | 6526023-6526763 | 741_na 246_aa | rsmE | Ribosomal RNA small subunit methyltransferase E |
| 6078 | CP002417.1 | GCA_000184745.1_06078 | CDS | open | 6526860-6528218 | 1359_na 452_aa | hypothetical protein | |
| 6079 | CP002417.1 | GCA_000184745.1_06079 | CDS | open | 6528317-6528778 | 462_na 153_aa | hypothetical protein | |
| 6080 | CP002417.1 | GCA_000184745.1_06080 | CDS | open | 6528870-6530039 | 1170_na 389_aa | rfnT | Riboflavin transporter RfnT |
| 6081 | CP002417.1 | GCA_000184745.1_06081 | CDS | open | 6530025-6530903 | 879_na 292_aa | Monoacylglycerol lipase | |
| 6082 | CP002417.1 | GCA_000184745.1_06082 | CDS | open | 6530900-6532444 | 1545_na 514_aa | hypothetical protein | |
| 6083 | CP002417.1 | GCA_000184745.1_06083 | CDS | open | 6532502-6533296 | 795_na 264_aa | hypothetical protein | |
| 6084 | CP002417.1 | GCA_000184745.1_06084 | CDS | open | 6533293-6533814 | 522_na 173_aa | hypothetical protein | |
| 6085 | CP002417.1 | GCA_000184745.1_06085 | CDS | open | 6533949-6534875 | 927_na 308_aa | hypothetical protein | |
| 6086 | CP002417.1 | GCA_000184745.1_06086 | CDS | open | 6534820-6535407 | 588_na 195_aa | yigZ | IMPACT family member YigZ |
| 6087 | CP002417.1 | GCA_000184745.1_06087 | CDS | open | 6535430-6536017 | 588_na 195_aa | metXA | Bifunctional methionine biosynthesis protein MetXAMetW |
| 6088 | CP002417.1 | GCA_000184745.1_06088 | CDS | open | 6536014-6537135 | 1122_na 373_aa | metXS | Homoserine O-succinyltransferase |
| 6089 | CP002417.1 | GCA_000184745.1_06089 | CDS | open | 6537293-6537856 | 564_na 187_aa | mneA | Putative manganese exporter |
| 6090 | CP002417.1 | misc_RNA | open | 6537875-6538052 | yybP-ykoY | |||
| 6091 | CP002417.1 | GCA_000184745.1_06091 | CDS | open | 6538313-6538882 | 570_na 189_aa | hypothetical protein | |
| 6092 | CP002417.1 | GCA_000184745.1_06092 | CDS | open | 6538951-6539739 | 789_na 262_aa | putative oxidoreductase | |
| 6093 | CP002417.1 | GCA_000184745.1_06093 | CDS | open | 6539764-6540417 | 654_na 217_aa | lptC | Lipopolysaccharide export system protein LptC |
| 6094 | CP002417.1 | GCA_000184745.1_06094 | CDS | open | 6540414-6540962 | 549_na 182_aa | kdsC | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC |
| 6095 | CP002417.1 | GCA_000184745.1_06095 | CDS | open | 6540962-6541963 | 1002_na 333_aa | kdsD | Arabinose 5-phosphate isomerase KdsD |
| 6096 | CP002417.1 | GCA_000184745.1_06096 | CDS | open | 6542051-6544042 | 1992_na 663_aa | kefC_3 | Glutathione-regulated potassium-efflux system protein KefC |
| 6097 | CP002417.1 | GCA_000184745.1_06097 | CDS | open | 6544159-6545088 | 930_na 309_aa | hypothetical protein | |
| 6098 | CP002417.1 | GCA_000184745.1_06098 | CDS | open | 6545194-6545655 | 462_na 153_aa | hypothetical protein | |
| 6099 | CP002417.1 | GCA_000184745.1_06099 | CDS | open | 6545757-6547166 | 1410_na 469_aa | mnmE | tRNA modification GTPase MnmE |
| 6100 | CP002417.1 | GCA_000184745.1_06100 | CDS | open | 6547244-6548935 | 1692_na 563_aa | yidC | Membrane protein insertase YidC |
| 6101 | CP002417.1 | GCA_000184745.1_06101 | CDS | open | 6548932-6549219 | 288_na 95_aa | yidD | Putative membrane protein insertion efficiency factor |
| 6102 | CP002417.1 | GCA_000184745.1_06102 | CDS | open | 6549216-6549635 | 420_na 139_aa | rnpA | Ribonuclease P protein component |
| 6103 | CP002417.1 | GCA_000184745.1_06103 | CDS | open | 6549722-6549856 | 135_na 44_aa | rpmH | 50S ribosomal protein L34 |
