Genome Meta Information: Streptococcus sanguinis BCC28 (GCA_003942275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003942275.1 | ||
| HOMD Taxon-ID | HMT-0758 | ||
| Species Name (in use by HOMD) | Streptococcus sanguinis | ||
| Organism Name (as deposited) | HMT-758 Streptococcus sanguinis BCC28 | ||
| Strain or Isolate | BCC28 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sanguinis_N |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 114 | ||
| Contigs |
|
||
| Total Sequence Length | 2,380,964 (bp) | ||
| GC Percentage | 43.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/275/GCA_003942275.1_ASM394227v1 | ||
| CDS | 2279 | ||
| Genes | 2361 | ||
| mRNA | 2361 | ||
| misc RNA | 28 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.23 % | ||
| CheckM Completeness | 99.09 % | ||
| CheckM Contamination | 0.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM394227v1 |
| GenBank Assembly Accession | GCA_003942275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003942275.1 [NCBI] |
| BioSample | SAMN09631777 [NCBI] |
| BioProject | PRJNA480251 [NCBI] |
| Submitter | Clemson University |
| Submission Date | 2018-07-09T11:29:06.007 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RJMN01 |
| NCBI TaxID | 1305 |
| Isolation Source | dental plaque |
| Geo Location | USA: Florida |
