Genome Meta Information: Streptococcus sanguinis S28 (GCA_008329445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008329445.1 | ||
| HOMD Taxon-ID | HMT-0758 | ||
| Species Name (in use by HOMD) | Streptococcus sanguinis | ||
| Organism Name (as deposited) | HMT-758 Streptococcus sanguinis S28 | ||
| Strain or Isolate | S28 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sanguinis_O |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 150 | ||
| Contigs |
|
||
| Total Sequence Length | 2,367,753 (bp) | ||
| GC Percentage | 43.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/329/445/GCA_008329445.1_ASM832944v1 | ||
| CDS | 2287 | ||
| Genes | 2362 | ||
| mRNA | 2362 | ||
| misc RNA | 31 | ||
| rRNA | 3 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.33 % | ||
| CheckM Completeness | 99.28 % | ||
| CheckM Contamination | 0.75 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM832944v1 |
| GenBank Assembly Accession | GCA_008329445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008329445.1 [NCBI] |
| BioSample | SAMN12139124 [NCBI] |
| BioProject | PRJNA551103 [NCBI] |
| Submitter | Hangzhou center for disease control and prevention |
| Submission Date | 2019-06-26T05:21:07.753 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VIBR01 |
| NCBI TaxID | 1305 |
| Isolation Source | throat swab of children with scarlet fever |
| Geo Location | China: Hangzhou |
