Genome Meta Information: Streptococcus sanguinis IsoGale022 (GCA_031142805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_031142805.1 | ||
| HOMD Taxon-ID | HMT-0758 | ||
| Species Name (in use by HOMD) | Streptococcus sanguinis | ||
| Organism Name (as deposited) | HMT-758 Streptococcus sanguinis IsoGale022 | ||
| Strain or Isolate | IsoGale022 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sanguinis_A |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 55 | ||
| Contigs |
|
||
| Total Sequence Length | 2,349,329 (bp) | ||
| GC Percentage | 43.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/142/805/GCA_031142805.1_ASM3114280v1 | ||
| CDS | 2271 | ||
| Genes | 2374 | ||
| mRNA | 2374 | ||
| misc RNA | 55 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.45 % | ||
| CheckM Contamination | 0.32 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3114280v1 |
| GenBank Assembly Accession | GCA_031142805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_031142805.1 [NCBI] |
| BioSample | SAMN26455294 [NCBI] |
| BioProject | PRJNA813203 [NCBI] |
| Submitter | Helmholtz Centre for Infection Research, HZI |
| Submission Date | 2022-03-06T05:18:04.643 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JAKZJI01 |
| NCBI TaxID | 2923524 |
| Isolation Source | bile duct of patients with Primary sclerosing cholangitis (PSC) |
| Geo Location | Germany |
