HOMD ::Order:Actinomycetales

Order: Actinomycetales

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales
Lower rank member(s): [Family:Actinomycetaceae]
Genera:

LINKS: Ecology Home | Life Page: Actinomycetales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Order: Actinomycetales

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	14.94	18.81	19.39	2.39	3.68	0.47	3.44	5.98	6.07	12.27	0.72	0.22	0.34	6.58	0.01	2.94	0.18	0.11
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	5.24	5.34	7.59	0.12	0.34	0.47	0.75	1.71	1.53	3.20	0.07	0.02	0.01	6.58	0.01	0	0	0.01
90^thp	22.87	35.34	41.28	5.39	9.23	0.47	8.30	11.94	17.21	24.02	1.67	0.65	0.25	6.58	0.02	7.16	0.17	0.12
Stdev	9.48	11.85	13.03	3.77	4.36	0	4.51	4.44	7.79	8.93	1.27	0.27	1.34	0	0.01	7.72	0.83	0.58
Prev(%)	95.83	99.49	100.00	73.33	83.90	100.00	75.00	100.00	95.45	99.53	9.23	13.04	13.33	0	0	12.50	2.13	1.87

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	10.78	11.68	0.89	2.75	4.22	3.05	7.37	5.63	10.19	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.63	1.36	0	0.12	0.72	0.64	0.98	0.64	1.58	0
90^thp	23.99	25.67	2.88	7.05	9.34	6.78	17.13	12.01	21.00	0.03
Stdev	10.90	10.51	1.51	3.51	4.19	2.93	6.50	5.34	8.74	0.02
Prev(%)	98.70	98.70	85.71	97.40	98.70	96.10	100.00	98.70	100.00	18.18

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	4.05	4.26	0.35	1.31	2.78	1.73	3.61	3.02	5.12	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.39	0.74	0	0.07	0.61	0.38	0.68	0.36	0.90	0
90^thp	11.31	9.03	1.00	3.44	6.45	4.02	7.33	7.09	12.70	0
Stdev	5.69	5.02	0.96	1.89	2.62	1.85	3.17	3.25	4.83	0.01
Prev(%)	100.00	100.00	64.19	95.27	100.00	100.00	99.32	99.32	100.00	8.39

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	10.44	10.89	1.47	3.19	4.51	2.80	6.64	5.68	9.83	0.18	0.14	0.10	0.42	0.49	0.11	0.07	0.15	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.80	2.29	0.02	0.19	0.86	0.52	1.36	0.63	2.35	0	0	0	0	0	0	0	0	0
90^thp	21.33	23.37	4.56	7.79	9.49	7.12	14.44	13.36	18.44	0.44	0.22	0.17	1.31	1.41	0.01	0	0	0
Stdev	9.55	8.81	2.30	3.90	4.25	2.87	5.50	4.96	7.18	0.38	0.66	0.38	0.92	1.05	0.87	0.57	1.29	0
Prev(%)	96.03	96.69	94.41	95.89	97.31	96.92	99.41	95.33	98.71	66.33	47.99	36.26	54.60	60.37	14.09	9.46	7.89	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.56	10.97	2.57	4.66	7.52	3.36	8.36	5.86	10.30	0.34	0.55	0.51	1.38	1.38	0	0	0	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.45	2.06	0	0.53	1.80	0.74	1.53	0.74	1.95	0	0	0	0	0	0	0	0	0
90^thp	21.07	24.42	6.28	11.04	14.62	6.85	18.60	12.65	21.52	0.84	1.17	1.16	2.97	3.61	0	0	0	0.01
Stdev	9.02	8.79	5.69	4.99	6.09	3.52	6.95	5.57	7.88	0.83	1.77	2.20	2.63	3.14	0	0	0	0.19
Prev(%)	99.75	99.02	87.41	99.01	99.23	99.70	99.69	98.78	100.00	69.35	61.47	59.57	83.45	82.00	0	0	0	11.44

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	6.43	8.40	2.69	1.17	1.88	2.79	2.92	2.84	3.75	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.47	1.00	0.03	0.16	0.32	0.50	0.55	0.40	0.04	0
90^thp	16.07	24.78	9.55	3.10	4.08	6.77	6.05	5.58	7.13	0.04
Stdev	8.19	10.38	4.77	1.17	1.28	2.59	2.33	2.61	3.44	0.03
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	10.90	15.00	14.11	2.53	4.76	0.54	2.88	3.93	5.91	12.10	0.43	0.13	0.15	4.99	0.08	0.99	0.16	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.28	3.40	3.67	0	0.33	0.54	0.36	0.12	0.95	3.00	0	0	0	4.99	0	0	0	0
90^thp	19.45	30.13	30.26	5.77	11.38	0.54	7.08	7.49	12.71	24.14	0.49	0.22	0.07	4.99	0.38	0.40	0.10	0
Stdev	9.11	11.04	11.59	4.21	6.20	0	4.46	3.09	7.51	9.02	2.00	0.33	0.78	0	0.18	3.54	1.11	0.52
Prev(%)	95.83	99.75	100.00	82.35	98.40	100.00	100.00	87.50	100.00	99.53	24.32	50.00	34.38	100.00	18.18	21.43	17.17	4.00

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