HOMD ::Species:Gallibacter brachus

Species: Gallibacter brachus (HMT-0557) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Clostridia; Peptostreptococcales; Anaerovoracaceae; Gallibacter; Gallibacter brachus

LINKS: Ecology Home | HMT-0557: [Body Sites Data] [Taxon Description] | Life Page: Gallibacter brachus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Gallibacter brachus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.50	0.05	0.24	0.02	0.02	0	0.07	0.01	0.46	0.01	0	0	0	0.03	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.01	0	0	0	0.04	0	0	0	0	0	0	0.03	0	0	0	0
90^thp	1.20	0.13	0.58	0.05	0.04	0	0.12	0.03	0.45	0.01	0.01	0.01	0	0.03	0	0	0	0.01
Stdev	0.94	0.13	0.31	0.02	0.05	0	0.04	0.01	1.31	0.01	0.01	0	0	0	0	0	0	0
Prev(%)	58.33	29.87	45.83	6.67	1.24	0	0	0	45.45	3.07	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.11	0.02	0.01	0.01	0.01	0	0.06	0.13	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.43	0.06	0	0.03	0.02	0.02	0.05	0.29	0	0
Stdev	0.19	0.04	0.04	0.04	0.02	0.01	0.37	0.51	0	0
Prev(%)	49.35	31.17	3.90	22.08	19.48	11.69	23.38	35.06	2.60	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.16	0.04	0	0.01	0.01	0.01	0.05	0.12	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.41	0.10	0	0.05	0.05	0.05	0.06	0.19	0	0
Stdev	0.24	0.11	0.03	0.04	0.03	0.05	0.26	0.44	0.01	0
Prev(%)	68.24	35.13	2.70	22.30	21.62	20.27	29.73	34.46	10.13	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.11	0.02	0	0.01	0	0.01	0.05	0.12	0	0	0	0	0.03	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.33	0.05	0	0.01	0	0.03	0.08	0.28	0	0	0	0	0	0	0	0	0	0
Stdev	0.19	0.04	0	0.04	0	0.02	0.21	0.43	0	0	0.01	0	0.23	0.11	0	0	0	0
Prev(%)	61.59	38.41	0	18.49	0	20.77	25.30	42.00	0	0	2.30	0	3.45	2.77	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.16	0.03	0	0	0	0	0.08	0.20	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.46	0.09	0	0	0	0	0.13	0.59	0	0	0	0	0	0	0	0	0	0
Stdev	0.25	0.10	0	0	0	0	0.29	0.49	0	0	0	0	0	0	0	0	0	0
Prev(%)	67.65	35.85	0	0	0	0	30.84	48.91	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.52	0.09	0.01	0.06	0.03	0.02	0.05	0.23	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.32	0.15	0.03	0.14	0.09	0.05	0.10	0.76	0.01	0
Stdev	1.13	0.20	0.03	0.13	0.06	0.05	0.14	0.61	0	0
Prev(%)	72.97	64.71	41.86	60.00	50.00	56.00	60.61	67.74	25.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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