HOMD ::Genus:Lachnospiraceae [G2]

Genus: Lachnospiraceae [G2]

Full Lineage: Bacteria; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospiraceae [G2]
Lower rank member(s): [Species:Lachnospiraceae [G2] bacterium HMT-088] [Species:Lachnospiraceae [G2] bacterium HMT-096]

LINKS: Ecology Home | Life Page: Lachnospiraceae [G2]

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Lachnospiraceae [G2]

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.03	0.12	0	0.06	0.07	0.15	0.30	0.38	0.74	0.06	0	0	0.01	0	0	0.01	0.03
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.07	0.01	0.01	0.01	0.01	0	0	0	0.01	0	0	0	0.01
90^thp	0.01	0.01	0.09	0.01	0.10	0.07	0.42	0.72	1.40	2.14	0.03	0	0	0.01	0	0.01	0.01	0.07
Stdev	0.01	0.22	0.50	0	0.24	0	0.21	0.46	0.62	1.64	0.30	0	0.01	0	0	0	0.02	0.04
Prev(%)	4.17	4.05	8.33	0	8.98	100.00	12.50	71.43	36.36	64.78	3.08	0	0	0	0	0	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0.01	0	0.02	0.13	0.04	0.78	0.59	0.50	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.07	0.40	0.16	2.63	1.47	1.93	0
Stdev	0.01	0.04	0.01	0.05	0.30	0.10	1.57	1.32	1.28	0
Prev(%)	5.20	3.90	6.49	36.36	48.05	28.57	59.74	57.14	50.65	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.05	0.05	0.01	0.11	0.37	0.17	1.35	0.99	0.86	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.02	0.20	1.17	0.52	4.32	4.12	2.87	0
Stdev	0.37	0.49	0.03	0.43	0.89	0.36	2.36	1.91	1.95	0
Prev(%)	4.73	9.46	11.49	39.19	52.70	45.95	62.84	62.84	61.49	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.01	0.05	0.24	0.05	0.95	0.72	0.66	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.02	0.10	0.78	0.14	3.56	2.73	2.34	0	0	0	0	0	0	0	0	0
Stdev	0	0	0.04	0.17	0.57	0.15	1.72	1.43	1.36	0	0	0	0	0.04	0	0	0	0
Prev(%)	0	0	12.59	35.62	53.02	32.31	64.88	62.67	56.13	0	0	0	0	6.91	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.05	0	0.18	0.59	0.19	1.69	1.39	1.14	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.03	0.04	0	0.36	1.82	0.60	5.77	4.75	3.46	0	0	0	0	0	0	0	0	0
Stdev	0.10	0.33	0	0.71	1.23	0.41	2.92	2.77	2.46	0	0	0	0	0	0	0	0	0
Prev(%)	13.83	24.88	0	38.96	54.22	51.19	63.86	63.75	63.75	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0.03	0.11	0.02	0.04	0.10	0.42	0.40	0.40	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.03	0.20	0.06	0.13	0.29	1.04	1.46	1.36	0
Stdev	0.04	0.10	0.34	0.03	0.08	0.27	0.94	0.79	0.85	0
Prev(%)	24.32	38.23	48.84	65.71	57.14	64.00	78.79	77.42	62.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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