HOMD ::Species:Lachnospiraceae [G3] bacterium HMT-100

Species: Lachnospiraceae [G3] bacterium HMT-100 (HMT-0100) Primary Body Site: Oral

Full Lineage: Bacteria; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospiraceae [G3]; Lachnospiraceae [G3] bacterium HMT-100

LINKS: Ecology Home | HMT-0100: [Body Sites Data] [Taxon Description] | Life Page: Lachnospiraceae [G3] bacterium HMT-100

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Lachnospiraceae [G3] bacterium HMT-100

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.12	0.13	0	0.02	0.03	0.05	0.06	0.07	0.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.43	0	0.07	0.09	0.13	0.08	0.17	0.11	0
Stdev	0.16	0.22	0.02	0.04	0.09	0.17	0.22	0.22	0.11	0
Prev(%)	61.04	50.65	7.79	38.96	36.36	29.87	23.38	40.26	22.08	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.13	0.17	0	0.03	0.04	0.08	0.12	0.14	0.07	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.36	0.50	0	0.10	0.14	0.24	0.30	0.39	0.15	0
Stdev	0.17	0.27	0.01	0.07	0.10	0.18	0.34	0.43	0.21	0
Prev(%)	64.86	64.19	8.78	29.73	31.08	38.51	31.08	39.87	29.05	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0.10	0	0.02	0.03	0.04	0.06	0.06	0.04	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.24	0.25	0	0.06	0.07	0.07	0.16	0.13	0.03	0	0	0	0	0	0	0	0	0
Stdev	0.16	0.21	0	0.04	0.08	0.14	0.19	0.19	0.16	0	0	0	0	0.03	0	0	0	0
Prev(%)	61.59	54.30	0	34.93	28.86	25.39	23.81	34.67	23.87	0	0	0	0	3.23	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.14	0	0	0	0	0.10	0.11	0.06	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.40	0.45	0	0	0	0	0.26	0.31	0.11	0	0	0	0	0	0	0	0	0
Stdev	0.21	0.24	0	0	0	0	0.35	0.33	0.22	0	0	0	0	0	0	0	0	0
Prev(%)	64.69	60.73	0	0	0	0	24.92	38.93	25.79	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.11	0.21	0.03	0.03	0.03	0.02	0.07	0.05	0.06	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.33	0.52	0.10	0.08	0.03	0.09	0.24	0.04	0.11	0
Stdev	0.26	0.43	0.05	0.04	0.07	0.04	0.13	0.15	0.17	0
Prev(%)	63.51	70.59	62.79	57.14	60.71	58.00	48.48	41.94	35.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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