HOMD ::Genus:Peptidiphaga

Genus: Peptidiphaga

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Peptidiphaga
Lower rank member(s): [Species:Peptidiphaga gingivicola] [Species:Peptidiphaga sp. HMT-183]

LINKS: Ecology Home | Life Page: Peptidiphaga

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Peptidiphaga

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.30	1.85	2.81	0.02	0.19	0	0.06	0	0	0.01	0.03	0.02	0.06	0.05	0	0.53	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.01	0.02	0	0	0	0.01	0	0	0	0	0	0	0.05	0	0	0	0
90^thp	6.46	5.30	8.91	0.04	0.15	0	0.12	0	0.01	0.01	0.05	0.04	0.01	0.05	0	1.40	0.01	0
Stdev	2.74	3.08	4.90	0.05	1.28	0	0.07	0	0	0.02	0.07	0.03	0.33	0	0	1.40	0.01	0.01
Prev(%)	75.00	83.54	54.17	0	9.29	0	0	0	0	4.02	0	0	3.33	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.52	0.50	0	0.11	0	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.71	1.07	0	0.05	0	0.04	0	0	0	0
Stdev	1.16	0.98	0.01	0.84	0.01	0.11	0.01	0.01	0	0
Prev(%)	64.94	63.64	7.79	16.88	10.39	19.48	7.79	3.90	1.30	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.59	0.56	0.04	0.05	0.02	0.02	0.01	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.47	1.43	0	0.08	0.03	0.05	0.02	0.03	0	0
Stdev	1.25	0.90	0.42	0.24	0.11	0.05	0.02	0.03	0.01	0
Prev(%)	72.97	75.00	6.08	27.03	16.89	26.35	14.19	14.19	5.41	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.68	0.73	0.04	0.09	0	0	0	0	0	0	0.02	0.01	0	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.75	2.24	0.03	0.11	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.55	1.81	0.30	0.70	0	0	0	0	0	0	0.19	0.12	0	0.26	0	0	0	0
Prev(%)	74.17	73.51	16.08	29.45	0	0	0	0	0	0	5.46	5.38	0	5.53	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.66	0.75	0.04	0.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.67	1.68	0.02	0.11	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.36	1.87	0.32	0.54	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	79.51	76.83	11.11	26.30	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.43	1.08	0.01	0.01	0.06	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.95	2.14	0.02	0.02	0.03	0.01	0.01	0	0	0
Stdev	0.91	2.40	0.04	0.04	0.26	0.01	0	0	0	0
Prev(%)	82.43	88.23	41.86	57.14	46.43	46.00	27.27	19.36	10.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0.12	0.97	0	0.01	0	0	0	0	0	0	0	0.07	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.06	0.26	1.35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.32	0.38	2.80	0.01	0.07	0	0	0	0	0.01	0	0	0.37	0	0	0	0	0
Prev(%)	16.67	34.34	50.00	5.88	5.58	0	0	0	0	0.70	0	4.17	3.13	0	0	0	0.51	0

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