HOMD ::Species:Porphyromonas pasteri

Species: Porphyromonas pasteri (HMT-0279) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas pasteri

LINKS: Ecology Home | HMT-0279: [Body Sites Data] [Taxon Description] | Life Page: Porphyromonas pasteri

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Porphyromonas pasteri

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.60	0.99	0.11	0.52	1.07	3.90	4.50	2.97	3.36	2.49	0.12	0.02	0.01	0.31	0	0.35	0.16	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0.02	0.07	3.90	0.68	0.06	0.10	0.02	0	0	0	0.31	0	0	0	0
90^thp	2.15	3.12	0.24	1.26	2.60	3.90	8.20	7.03	9.18	7.99	0.15	0.04	0.01	0.31	0	0.86	0.02	0.01
Stdev	0.87	1.49	0.23	0.53	1.43	0	3.40	3.05	3.81	3.60	0.41	0.03	0.01	0	0	0.99	1.51	0.05
Prev(%)	66.67	73.16	20.83	80.00	80.80	100.00	100.00	85.71	81.82	91.02	4.62	0	0	0	0	12.50	1.06	1.07

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.28	1.20	1.31	2.25	3.02	4.21	2.48	3.05	3.91	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.07	0.09	0.05	0.01	0.03	0.01	0
90^thp	3.46	3.82	3.55	5.82	7.60	9.88	6.84	7.26	11.63	0
Stdev	2.77	2.21	2.31	2.91	3.26	4.54	3.11	3.41	5.96	0.01
Prev(%)	76.62	74.03	81.82	97.40	93.51	90.91	89.61	89.61	89.61	10.39

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to P. pasteri and P. sp. HMT 278 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.87	1.03	0.29	1.41	1.77	2.40	1.77	1.78	2.16	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.07	0.06	0.17	0.01	0.03	0.01	0
90^thp	2.84	3.26	0.56	3.19	4.06	5.59	4.80	4.51	6.01	0
Stdev	1.34	1.34	0.76	1.82	1.76	2.26	2.17	2.06	2.77	0
Prev(%)	84.46	82.43	71.62	95.27	94.59	97.30	90.54	92.57	93.92	3.50

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.72	0.91	0.89	1.86	2.68	3.17	2.59	2.85	2.94	0.06	0.07	0.04	0.10	0.19	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.05	0.04	0.04	0.02	0.03	0	0	0	0	0	0	0	0	0	0
90^thp	2.12	2.97	2.58	4.05	7.51	8.22	7.73	8.68	9.52	0.11	0.07	0.03	0.23	0.39	0	0	0	0
Stdev	1.29	1.76	1.48	2.60	3.26	3.85	3.54	3.63	4.36	0.24	0.64	0.39	0.36	0.71	0	0	0	0
Prev(%)	80.13	81.46	84.61	93.84	92.62	91.54	91.37	94.00	89.03	33.67	27.59	20.68	27.01	32.72	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.23	1.73	1.76	4.07	4.97	5.19	3.55	4.34	4.22	0.11	0.44	0.30	1.01	0.73	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.21	0.15	0.33	0.04	0.09	0.02	0	0	0	0	0	0	0	0	0
90^thp	3.68	5.37	5.45	9.78	11.18	12.30	10.19	11.48	12.59	0.20	0.32	0.26	1.16	1.38	0	0	0	0
Stdev	2.06	2.70	2.77	4.43	5.15	5.06	4.51	5.09	5.60	0.43	1.92	1.31	3.85	2.20	0	0	0	0
Prev(%)	84.94	84.63	83.70	95.28	94.12	97.02	92.52	94.89	91.97	42.53	35.03	29.63	46.21	45.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.84	1.21	1.14	1.24	2.97	5.95	1.60	1.92	1.90	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.01	0	0	0.03	0.02	0.02	0.04	0.01	0
90^thp	1.68	4.09	3.39	3.01	7.35	18.39	4.29	5.08	6.11	0.02
Stdev	2.58	2.23	2.07	1.97	6.61	7.99	2.74	3.88	2.75	0.03
Prev(%)	87.84	97.06	97.67	94.29	96.43	92.00	100.00	96.77	100.00	25.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.59	1.06	0.10	0.53	1.79	5.92	5.51	1.83	3.65	2.86	0.10	0	0	0.09	0	0.19	0.12	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.03	5.92	0.50	0	0	0.02	0	0	0	0.09	0	0	0	0
90^thp	1.99	3.25	0.23	1.62	4.90	5.92	11.09	4.76	9.90	8.94	0.02	0.01	0	0.09	0	0	0	0
Stdev	0.91	1.64	0.25	0.82	2.43	0	4.46	2.42	4.58	4.12	0.57	0.01	0.01	0	0	0.72	1.24	0.03
Prev(%)	70.83	82.07	41.67	64.71	91.75	100.00	100.00	75.00	84.00	92.25	10.81	12.50	9.38	100.00	0	7.14	5.56	1.82

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