HOMD ::Genus:Rothia

Genus: Rothia

Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia
Lower rank member(s): [Species:Rothia aeria] [Species:Rothia dentocariosa] [Species:Rothia mucilaginosa]

LINKS: Ecology Home | Life Page: Rothia

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Rothia

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	6.02	8.70	0.81	0.64	4.67	12.12	1.83	1.09	1.37	5.48	0.31	0.11	0.08	3.80	0.02	1.07	0.04	0.03
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	1.09	1.21	0.01	0.02	0.39	12.12	0.52	0.43	0.27	0.84	0.02	0	0.01	3.80	0	0	0	0
90^thp	9.41	20.41	2.19	1.84	12.26	12.12	4.14	1.67	3.27	12.09	0.79	0.34	0.07	3.80	0.05	2.73	0.07	0.01
Stdev	7.14	8.88	0.92	0.94	5.96	0	1.94	0.55	1.13	5.80	0.45	0.14	0.26	0	0.04	2.86	0.15	0.26
Prev(%)	100.00	99.75	70.83	80.00	94.43	100.00	75.00	100.00	95.45	99.76	6.15	17.39	16.67	0	0	12.50	1.06	1.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.39	9.85	0.73	3.85	4.01	2.33	2.67	1.92	4.93	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.61	1.13	0	0.24	0.76	0.17	0.15	0.14	0.69	0
90^thp	16.36	23.47	2.24	9.06	7.49	5.34	7.07	5.11	12.98	0
Stdev	8.22	9.34	1.41	5.18	3.72	3.51	2.88	2.38	5.09	0.01
Prev(%)	96.10	97.40	80.52	98.70	98.70	96.10	94.81	97.40	100.00	7.79

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.30	3.71	0.20	1.20	1.16	0.68	0.52	0.46	1.33	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.30	0	0.03	0.03	0.05	0	0	0	0
90^thp	5.38	8.65	0.37	2.86	2.88	1.68	1.33	1.03	3.54	0
Stdev	3.82	5.37	0.68	2.37	1.61	0.96	0.72	0.71	2.09	0
Prev(%)	93.92	98.65	50.68	91.22	93.24	94.59	82.43	81.08	83.78	2.80

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	5.81	8.24	0.88	5.27	4.56	2.03	1.86	1.51	4.10	0.19	0.12	0.12	0.47	0.43	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.35	1.03	0	0.37	0.51	0.04	0.14	0.09	0.23	0	0	0	0	0	0	0	0	0
90^thp	13.64	17.70	2.93	13.90	9.13	4.45	4.32	3.78	10.54	0.38	0.22	0.20	1.21	1.20	0	0	0	0
Stdev	5.99	8.78	1.78	7.04	5.08	3.12	2.15	2.06	5.05	0.61	0.40	0.76	0.95	0.82	0	0	0	0
Prev(%)	95.36	96.03	89.51	95.89	97.31	90.77	96.73	94.00	96.13	66.00	50.86	43.91	65.52	64.52	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.26	5.26	0.99	4.16	3.59	1.33	1.37	1.08	2.89	0.18	0.37	0.31	0.67	0.72	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.26	0.66	0	0.25	0.43	0.10	0.04	0.06	0.20	0	0	0	0	0	0	0	0	0
90^thp	8.34	12.20	2.39	11.46	8.96	2.85	3.24	2.79	6.90	0.43	0.52	0.36	1.00	1.32	0	0	0	0
Stdev	4.45	6.13	2.92	6.11	3.97	2.02	2.10	1.76	4.23	0.48	1.73	1.40	2.29	2.19	0	0	0	0
Prev(%)	98.77	100.00	73.09	98.51	99.23	97.92	93.46	95.62	98.78	60.54	44.59	40.43	60.00	67.33	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	5.30	3.36	0.77	4.51	3.88	3.05	1.05	0.85	1.61	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.23	0.03	0.45	0.47	0.27	0.10	0.07	0.06	0
90^thp	15.76	6.52	1.88	11.59	8.59	7.78	2.54	1.63	4.24	0.01
Stdev	8.12	5.92	1.52	5.50	5.60	3.25	1.02	1.34	2.14	0.01
Prev(%)	100.00	100.00	100.00	100.00	100.00	100.00	100.00	96.77	100.00	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.84	2.73	0.43	0.35	3.82	9.56	1.15	0.67	0.93	4.90	0.14	0.03	0.05	1.80	0.01	0.07	0.05	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.24	0.17	0	0	0.10	9.56	0.13	0.03	0.10	0.64	0	0	0	1.80	0	0	0	0
90^thp	4.77	6.68	1.21	0.92	10.79	9.56	2.66	1.58	2.56	11.23	0.11	0.10	0.03	1.80	0	0	0	0
Stdev	2.51	3.56	0.87	0.55	5.84	0	1.21	0.75	0.95	5.83	0.73	0.06	0.24	0	0.04	0.25	0.56	0.18
Prev(%)	95.83	97.47	54.17	64.71	96.01	100.00	100.00	87.50	92.00	99.53	17.57	50.00	25.00	100.00	9.09	7.14	6.57	1.27

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