HOMD ::Species:Rothia dentocariosa

Species: Rothia dentocariosa (HMT-0587) Primary Body Site: Oral

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Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia dentocariosa

LINKS: Ecology Home | HMT-0587: [Body Sites Data] [Taxon Description] | Life Page: Rothia dentocariosa

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Rothia dentocariosa

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	4.21	6.07	0.36	0.31	1.30	0.03	0.45	0.01	0.04	0.03	0.12	0.04	0.01	1.15	0.01	0.88	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.26	0.45	0	0	0.07	0.03	0.07	0	0	0	0.01	0	0	1.15	0	0	0	0
90^thp	6.08	15.68	0.92	1.07	3.31	0.03	1.03	0.03	0.07	0.07	0.25	0.11	0.03	1.15	0.04	2.27	0.02	0
Stdev	6.35	7.66	0.43	0.49	2.05	0	0.72	0.02	0.09	0.05	0.28	0.05	0.03	0	0.03	2.35	0.07	0.07
Prev(%)	100.00	98.73	54.17	66.67	79.26	0	50.00	0	4.55	34.99	4.62	4.35	3.33	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to R. aeria and R. dentocariosa were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.67	4.89	0.13	0.79	0.19	0.41	0.14	0.06	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.30	0.56	0	0.05	0.01	0	0	0	0	0
90^thp	8.17	11.72	0.28	1.79	0.53	1.09	0.13	0.13	0.05	0
Stdev	4.10	4.67	0.36	1.97	0.37	0.62	0.83	0.17	0.03	0
Prev(%)	96.10	97.40	63.64	97.40	93.51	88.31	59.74	59.74	49.35	5.20

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to R. dentocariosa and R. mucilaginosa were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.47	0.88	0.09	0.52	0.52	0.21	0.25	0.20	0.66	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.46	2.42	0.15	1.37	1.42	0.50	0.66	0.51	1.76	0
Stdev	0.97	1.86	0.33	1.17	0.77	0.35	0.36	0.32	1.04	0
Prev(%)	68.92	74.32	39.87	71.62	80.41	74.32	70.95	73.65	80.41	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.52	5.46	0.27	1.32	0.22	0.44	0.07	0.07	0.02	0.05	0.03	0.04	0.14	0.09	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.09	0.24	0	0.04	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	9.07	14.21	0.46	2.73	0.62	1.10	0.14	0.11	0.06	0.13	0.04	0.04	0.38	0.24	0	0	0	0
Stdev	4.75	7.81	0.93	2.84	0.47	0.91	0.32	0.25	0.06	0.15	0.13	0.35	0.43	0.27	0	0	0	0
Prev(%)	94.70	95.36	74.13	93.15	78.52	76.92	44.64	57.33	41.94	38.00	24.71	22.10	36.21	30.41	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.57	2.70	0.23	0.99	0.17	0.25	0.05	0.03	0.01	0.04	0.14	0.11	0.31	0.18	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	4.82	7.24	0.59	2.33	0.39	0.64	0.12	0.07	0.03	0.10	0.06	0.05	0.22	0.22	0	0	0	0
Stdev	2.99	4.77	0.79	2.10	0.53	0.44	0.20	0.10	0.07	0.18	1.04	0.81	1.72	0.88	0	0	0	0
Prev(%)	93.58	97.32	42.22	86.60	58.57	77.38	33.02	35.77	24.57	27.20	22.29	18.52	33.10	38.67	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 188 and 587 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.94	1.27	0.10	1.29	0.34	0.15	0.08	0.03	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.06	0	0.12	0.01	0.01	0	0	0	0
90^thp	9.21	3.88	0.26	4.35	1.26	0.29	0.15	0.05	0.03	0
Stdev	5.91	1.78	0.21	2.20	0.55	0.30	0.23	0.06	0.06	0
Prev(%)	97.30	100.00	88.37	100.00	100.00	100.00	90.91	77.42	77.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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