HOMD ::Family:Ruminococcaceae

Family: Ruminococcaceae

Full Lineage: Bacteria; Bacillota; Clostridia; Eubacteriales; Ruminococcaceae
Lower rank member(s): [Genus:Ruminococcaceae [G1]] [Genus:Ruminococcaceae [G2]] [Genus:Ruminococcaceae [G3]]

LINKS: Ecology Home | Life Page: Ruminococcaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Family: Ruminococcaceae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.09	0.10	0.01	0.02	0.06	2.38	0.33	0.27	0.16	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.21	0.29	0.01	0.05	0.12	7.17	0.58	0.57	0.30	0
Stdev	0.22	0.25	0.02	0.05	0.12	4.03	0.99	0.88	0.45	0
Prev(%)	36.36	38.96	11.69	32.47	59.74	88.31	64.94	71.43	57.14	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.08	0.09	0	0.04	0.11	2.04	0.34	0.25	0.17	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.05	0	0	0	0
90^thp	0.24	0.25	0	0.13	0.23	4.41	0.77	0.66	0.37	0
Stdev	0.19	0.24	0.01	0.10	0.21	3.79	0.60	0.47	0.40	0
Prev(%)	38.51	41.89	10.13	43.24	60.13	92.57	78.38	69.59	60.13	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.04	0	0.03	0.09	1.84	0.30	0.27	0.19	0	0	0	0.01	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.17	0.10	0	0.08	0.22	4.13	0.87	0.60	0.37	0	0	0	0	0	0	0	0	0
Stdev	0.36	0.13	0	0.06	0.15	2.91	0.51	0.73	0.78	0.04	0.03	0	0.07	0.06	0	0	0	0
Prev(%)	42.38	30.46	0	45.89	63.09	89.23	74.11	80.67	70.97	2.67	3.16	0	5.17	2.77	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0.07	0	0.08	0.20	3.06	0.46	0.41	0.23	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.05	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.24	0.18	0	0.23	0.54	7.96	1.30	1.03	0.58	0	0	0	0	0	0	0	0	0
Stdev	0.24	0.22	0	0.17	0.31	4.70	0.72	0.73	0.47	0	0	0	0	0	0	0	0	0
Prev(%)	46.42	39.51	0	51.37	66.50	91.07	73.83	80.53	73.97	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.12	0.04	0.07	0.04	0.03	0.06	0.25	0.23	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.10	0.08	0.10	0.09	0.18	0.58	0.55	0.17	0
Stdev	0.79	0.06	0.26	0.09	0.06	0.10	0.47	0.48	0.06	0
Prev(%)	52.70	55.88	62.79	77.14	57.14	80.00	90.91	90.32	90.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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