HOMD ::Genus:Ruminococcaceae [G1]

Genus: Ruminococcaceae [G1]

Full Lineage: Bacteria; Bacillota; Clostridia; Eubacteriales; Ruminococcaceae; Ruminococcaceae [G1]
Lower rank member(s): [Species:Ruminococcaceae [G1] bacterium HMT-075]

LINKS: Ecology Home | Life Page: Ruminococcaceae [G1]

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Genus: Ruminococcaceae [G1]

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.08	0.10	0	0.02	0.05	2.22	0.29	0.22	0.12	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.20	0.29	0	0.04	0.11	6.79	0.57	0.42	0.23	0
Stdev	0.22	0.25	0.01	0.04	0.11	3.88	0.94	0.82	0.40	0
Prev(%)	36.36	36.36	9.09	28.57	46.75	81.82	51.95	54.55	41.56	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.06	0.08	0	0.03	0.07	1.59	0.21	0.15	0.10	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.22	0.22	0	0.09	0.16	3.85	0.54	0.52	0.22	0
Stdev	0.14	0.23	0.01	0.08	0.18	3.35	0.48	0.35	0.34	0
Prev(%)	35.81	39.19	4.73	34.46	44.59	85.14	64.19	51.35	39.19	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0.04	0	0.02	0.04	1.34	0.17	0.13	0.12	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.15	0.10	0	0.04	0.11	3.58	0.50	0.28	0.15	0	0	0	0	0	0	0	0	0
Stdev	0.29	0.13	0	0.05	0.09	2.43	0.42	0.34	0.70	0	0.03	0	0	0.06	0	0	0	0
Prev(%)	36.42	30.46	0	27.40	39.60	81.54	52.38	59.33	43.23	0	3.16	0	0	2.77	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0.07	0	0.05	0.10	2.31	0.26	0.23	0.12	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.20	0.18	0	0.16	0.27	7.21	0.76	0.63	0.33	0	0	0	0	0	0	0	0	0
Stdev	0.18	0.22	0	0.14	0.23	4.22	0.57	0.57	0.38	0	0	0	0	0	0	0	0	0
Prev(%)	40.74	39.51	0	33.99	43.99	86.31	52.65	57.66	47.20	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.12	0.03	0.06	0.03	0.02	0.04	0.20	0.12	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.09	0.10	0.06	0.08	0.07	0.12	0.38	0.17	0.09	0
Stdev	0.79	0.05	0.25	0.09	0.05	0.09	0.46	0.40	0.05	0
Prev(%)	47.30	50.00	51.16	62.86	42.86	66.00	75.76	70.97	65.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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