HOMD ::Subspecies:subsps. yurii

Subspecies: subsps. yurii (HMT-0377) Primary Body Site: Oral

Full Lineage: Bacteria; Bacillota; Clostridia; Peptostreptococcales; Filifactoraceae; Peptoanaerobacter; Peptoanaerobacter yurii; subsps. yurii

LINKS: Ecology Home | HMT-0377: [Body Sites Data] [Taxon Description] | Life Page: subsps. yurii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Subspecies: subsps. yurii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to HMT 106 and 377 were assigned half to each taxon.

Reads equally close to HMT 081, 106, and 377 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.14	0.11	0	0.01	0.03	0.07	0.03	0.03	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.37	0.30	0.01	0.03	0.08	0.17	0.08	0.08	0.07	0
Stdev	0.16	0.16	0.01	0.04	0.05	0.14	0.06	0.07	0.04	0
Prev(%)	76.35	68.24	12.16	31.76	47.97	62.84	41.22	45.27	37.16	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.23	0.13	0	0	0	0	0.01	0.01	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.70	0.35	0	0	0.01	0	0	0.01	0	0	0	0	0	0	0	0	0	0
Stdev	0.34	0.22	0	0	0.01	0	0.04	0.04	0	0	0	0	0.05	0	0	0	0	0
Prev(%)	72.85	70.20	0	0	12.08	0	8.93	16.67	0	0	0	0	1.72	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Neither HMT-377 nor HMT-922 were present singularly so these reads were split evenly at these sites (HPA,PTO,THR,TDO).Because HMT-922 is not present individually, all equidistant reads were assigned to HMT-377 at this body site (SAL).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.33	0.18	0.04	0	0.01	0.11	0.02	0.03	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.89	0.54	0.06	0	0.06	0.25	0.05	0.07	0.04	0	0	0	0	0	0	0	0	0
Stdev	0.42	0.29	0.28	0	0.04	0.29	0.09	0.07	0.03	0	0	0	0	0	0	0	0	0
Prev(%)	80.00	66.34	17.53	0	26.09	51.19	26.48	39.17	28.22	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.13	0.08	0.01	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.31	0.23	0.01	0.02	0.01	0.01	0	0	0	0
Stdev	0.30	0.19	0.04	0.01	0.01	0.01	0.01	0.01	0	0
Prev(%)	47.30	55.88	23.26	34.29	21.43	32.00	27.27	9.68	7.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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