HOMD ::Species:Selenomonas flueggei

Species: Selenomonas flueggei (HMT-0125) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas flueggei

LINKS: Ecology Home | HMT-0125: [Body Sites Data] [Taxon Description] | Life Page: Selenomonas flueggei

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Selenomonas flueggei

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.02	0.35	0	0.01	0.04	0.11	0.15	0.10	0.06	0.01	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.01	0	0	0.04	0	0.01	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.05	0.51	0.01	0.02	0.04	0.27	0.36	0.36	0.15	0.01	0	0	0	0	0.01	0	0
Stdev	0.05	0.04	0.85	0	0.02	0	0.12	0.17	0.17	0.10	0.05	0	0	0	0	0	0	0
Prev(%)	12.50	13.67	33.33	0	0	100.00	25.00	42.86	27.27	43.74	3.08	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. flueggei, S. noxia, and S. sp. HMT 388 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.23	0.25	0	0.01	0.01	0.10	0.01	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.62	0.67	0	0.04	0.01	0.20	0.03	0.03	0.01	0
Stdev	0.32	0.31	0.03	0.04	0.02	0.17	0.03	0.03	0.01	0
Prev(%)	84.46	80.41	10.13	41.89	25.68	81.76	33.11	34.46	15.54	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0	0	0	0	0.05	0	0.02	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0	0	0	0	0.13	0	0.03	0	0	0	0	0	0	0	0	0	0
Stdev	0.06	0	0	0	0	0.14	0	0.08	0	0	0	0	0	0	0	0	0	0
Prev(%)	28.48	0	0	0	0	30.00	0	18.67	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0	0	0	0	0.04	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0	0	0	0	0.09	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.06	0	0	0	0	0.12	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	30.86	0	0	0	0	31.55	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.03	0.03	0	0	0	0	0	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0.11	0	0.01	0.01	0	0.01	0	0	0
Stdev	0.06	0.05	0	0.01	0	0	0.01	0.09	0	0
Prev(%)	62.16	73.53	9.30	25.71	21.43	24.00	21.21	22.58	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.01	0.34	0	0	0	0	0	0.02	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.03	0.02	0.52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.07	0.04	0.94	0	0.01	0	0	0	0.09	0	0	0	0	0	0	0	0	0
Prev(%)	29.17	14.14	54.17	0	1.06	0	0	0	8.00	2.35	0	0	0	0	0	0	0	0

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