HOMD ::Species:Veillonella parvula

Species: Veillonella parvula (HMT-0161) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; Veillonella parvula

LINKS: Ecology Home | HMT-0161: [Body Sites Data] [Taxon Description] | Life Page: Veillonella parvula

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Veillonella parvula

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.43	3.17	2.76	2.69	1.82	0.06	1.12	0.32	0.28	0.28	0.07	0.15	0.01	0.78	0	0.59	0.05	0.05
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.64	0.33	0.06	0.02	0.10	0.06	0.62	0.11	0.06	0.15	0.01	0	0	0.78	0	0	0	0
90^thp	6.92	7.24	7.25	4.27	4.71	0.06	1.65	0.60	0.52	0.42	0.17	0.18	0.02	0.78	0	1.43	0.02	0.04
Stdev	2.87	3.08	5.17	4.55	2.57	0	0.52	0.22	0.19	0.15	0.10	0.57	0.04	0	0	1.57	0.42	0.29
Prev(%)	100.00	98.48	79.17	80.00	81.73	100.00	87.50	85.71	45.45	90.07	6.15	8.70	3.33	0	0	12.50	1.06	7.47

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to V. dispar strain DSM 20735 and V. parvula clone BU083 were assigned to V. dispar

reads equally close to V. parvula clone _X002 and V. dispar clone _X031 were assigned to V. parvula

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.35	2.91	1.35	1.30	0.20	1.10	0.18	0.11	0.07	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.15	0.22	0	0.01	0	0.01	0	0	0	0
90^thp	8.82	5.69	4.40	3.32	0.45	2.55	0.40	0.27	0.17	0.02
Stdev	4.56	4.14	2.84	2.21	0.29	1.07	0.54	0.27	0.22	0.07
Prev(%)	98.70	98.70	80.52	89.61	77.92	89.61	64.94	66.23	55.84	15.58

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to V. atypica, V. denticariosi, V. dispar, V. parvula, and V. rogosae were assigned one-fifth to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.80	0.75	0.28	0.57	1.17	2.32	1.55	1.41	2.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.08	0	0.08	0.32	0.87	0.55	0.46	0.81	0
90^thp	2.05	1.71	0.78	1.40	2.31	3.92	2.69	2.61	3.27	0.01
Stdev	1.11	0.86	0.59	0.56	0.78	1.19	0.85	0.87	0.97	0.04
Prev(%)	98.65	100.00	91.22	100.00	100.00	100.00	100.00	100.00	100.00	29.37

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-160 and HMT-161 were assigned to each taxon in proportion to the abundance of HMT-160 and HMT-161 individually at these sites (AKE,ANA,BMU,HPA,LAF,LRC,PTO,RAF,RRC,SAL,SUBP,SUPP,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.48	3.87	1.76	1.85	0.12	0.71	0.07	0.08	0.01	0.02	0.02	0.02	0.07	0.06	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.25	0.25	0.01	0.06	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	10.05	8.43	5.25	4.80	0.31	1.59	0.11	0.10	0.02	0.04	0.03	0.04	0.15	0.14	0	0	0	0
Stdev	4.26	4.47	3.50	3.00	0.21	0.82	0.29	0.45	0.04	0.06	0.13	0.09	0.26	0.20	0	0	0	0
Prev(%)	100.00	99.34	91.61	97.26	78.52	89.23	61.91	64.00	30.97	36.00	29.60	24.65	34.48	34.10	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-160 and HMT-161 were assigned to each taxon in proportion to the abundance of HMT-160 and HMT-161 individually at these sites (AKE,BMU,HPA,SAL,SUBP).

Neither HMT-160 nor HMT-161 were present singularly so these reads were split evenly at this site (ANA).

Because HMT-887 is not present individually, all equidistant reads were assigned to HMT-161 at this body site (SUPP).

Because HMT-160 is not present individually, all equidistant reads were assigned to HMT-161 at these sites (LAF,LRC,RAF).

Some of the reads equidistant from these taxa (160-161-524) are included in HMT-161 because they are too close to differentiate at these sites (SAL,THR,TDO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	4.63	4.69	3.30	3.17	0.68	1.57	0.79	0.66	0.71	0.08	0.46	0	0.97	0.81	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.34	0.45	0.04	0.26	0.01	0.38	0.03	0.02	0.11	0	0	0	0	0	0	0	0	0
90^thp	11.40	11.28	9.16	7.33	1.75	3.00	2.07	1.80	1.67	0.21	0.58	0	1.80	2.68	0	0	0	0
Stdev	5.82	4.77	6.46	4.79	0.92	1.29	1.03	1.07	0.79	0.20	1.71	0	2.53	1.54	0	0	0	0
Prev(%)	99.51	99.76	92.84	98.51	91.82	99.41	98.13	91.48	99.51	54.02	48.73	0	66.21	68.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 160, 161, and 524 were assigned one-third to each taxon.

Reads equally close to HMT 160, 161, and 887 were assigned one-third to each taxon.

Reads equally close to HMT 158, 160, and 161 were distributed equally among taxa.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.17	3.03	0.96	1.68	1.09	0.93	1.50	1.00	1.36	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.14	0.01	0.09	0.13	0.07	0.29	0.09	0.01	0
90^thp	6.66	8.27	3.95	5.38	2.01	2.31	2.80	2.41	2.68	0
Stdev	4.28	3.85	1.88	2.90	0.72	0.92	1.08	0.91	1.24	0
Prev(%)	98.65	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.97	3.88	3.10	4.47	2.98	0.02	1.19	0.03	0.21	0.06	0.05	0.13	0.01	0.72	0	0.41	0.03	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.79	0.39	0.02	0.01	0.09	0.02	0.39	0	0	0	0	0	0	0.72	0	0	0	0
90^thp	7.84	8.99	8.18	7.37	8.63	0.02	2.02	0.13	0.25	0.16	0	0.07	0.01	0.72	0	0.04	0	0.02
Stdev	3.48	3.89	6.05	8.04	4.09	0	0.73	0.06	0.75	0.13	0.44	0.57	0.04	0	0	1.50	0.31	0.22
Prev(%)	100.00	99.24	91.67	88.23	95.48	100.00	100.00	31.25	52.00	74.18	9.46	20.83	12.50	100.00	0	21.43	3.54	12.91

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