HOMD ::Subspecies:clade-626

Subspecies: clade-626 (HMT-0626) Primary Body Site: Oral

Download Options

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales; Gemellaceae; Gemella; Gemella haemolysans; clade-626

LINKS: Ecology Home | HMT-0626: [Body Sites Data] [Taxon Description] | Life Page: clade-626

Hide Legend

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Subspecies: clade-626

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.09	0.01	1.91	3.00	3.63	0.35	0.09	0.40	0.03	0.03	0.01	0.04	1.00	0	0.02	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0	0	0.60	0.41	3.63	0.13	0.02	0.04	0.01	0	0	0	1.00	0	0	0	0
90^thp	0.13	0.11	0.02	3.10	7.25	3.63	0.59	0.20	0.94	0.06	0.08	0.03	0.01	1.00	0	0.06	0.01	0
Stdev	0.09	0.47	0.01	1.37	3.06	0	0.20	0.09	0.73	0.15	0.03	0.02	0.19	0	0	0.05	0.01	0.01
Prev(%)	25.00	32.15	0	100.00	94.43	100.00	50.00	71.43	50.00	33.57	0	4.35	3.33	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.56	0.39	5.77	7.80	3.73	0.47	1.71	1.79	0.16	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0.56	1.06	0.57	0	0.07	0.05	0	0
90^thp	0.92	0.74	11.55	16.36	9.70	0.99	6.00	5.56	0.42	0
Stdev	1.77	1.03	4.94	6.34	4.61	0.60	2.59	3.01	0.24	0.01
Prev(%)	74.03	79.22	100.00	100.00	98.70	85.71	96.10	93.51	79.22	7.79

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to G. haemolysans, G. morbillorum, and G. sanguinis were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.15	0.15	0.88	1.76	0.83	0.20	0.60	0.52	0.24	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.01	0.10	0.23	0.17	0.04	0.05	0.05	0.02	0
90^thp	0.27	0.26	1.91	4.05	1.62	0.40	1.54	1.07	0.50	0
Stdev	0.27	0.31	0.89	1.78	0.91	0.16	0.68	0.67	0.24	0
Prev(%)	90.54	90.54	99.32	99.32	99.32	96.62	97.30	97.97	97.30	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.49	0.33	5.29	7.96	3.94	0.47	1.26	1.05	0.08	0.11	0.06	0.03	0.34	0.26	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0.59	1.55	0.40	0	0.01	0.02	0	0	0	0	0	0	0	0	0	0
90^thp	1.08	0.78	10.35	15.55	9.44	1.22	3.28	2.55	0.16	0.28	0.14	0.05	1.12	0.70	0	0	0	0
Stdev	1.44	0.81	4.44	6.97	4.69	0.66	2.58	2.12	0.17	0.27	0.25	0.14	0.70	0.61	0	0	0	0
Prev(%)	88.08	84.77	100.00	97.94	97.99	82.31	90.18	92.67	76.13	50.67	35.92	29.46	46.55	42.86	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Neither HMT-626 nor HMT-757 were present singularly so these reads were split evenly at these sites (AKE,BMU,MVA,PFO,STO,SUBP).

Some of the reads equidistant from these taxa (046-626-757) are included in HMT-626 because they are too close to differentiate at these sites (AKE,BMU).

Reads equidistant to HMT-626 and HMT-757 were assigned to each taxon in proportion to the abundance of HMT-626 and HMT-757 individually at this body site (THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.25	0.17	4.34	7.45	0	0	0	0	0	0.14	0	0.22	0.51	0.63	0	0.02	0.01	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0	0.53	1.21	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.41	0.38	9.77	18.06	0	0	0	0	0	0.35	0	0.40	1.10	1.33	0	0.01	0.01	0
Stdev	1.42	0.40	5.05	6.93	0	0	0	0	0	0.40	0	0.86	1.62	1.91	0	0.10	0.16	0.05
Prev(%)	94.07	90.00	99.26	100.00	0	0	30.22	0	0	60.54	0	52.47	74.48	72.00	0	19.67	18.85	7.30

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.15	0.07	2.26	2.96	1.14	0.27	0.66	0.99	0.15	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0.06	0.11	0.05	0.02	0.02	0.02	0.01	0
90^thp	0.51	0.10	8.47	8.26	3.31	0.44	1.67	2.90	0.47	0.04
Stdev	0.36	0.18	3.39	6.20	1.46	0.65	1.32	2.17	0.26	0.07
Prev(%)	79.73	88.23	100.00	100.00	100.00	100.00	100.00	100.00	95.00	25.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

Copyright 2007-2025, The Forsyth Institute
Hosted on Amazon AWS EC2

Body Site Legend: