HOMD ::Species:Streptococcus agalactiae

Species: Streptococcus agalactiae (HMT-0537) Primary Body Site: Vaginal

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus agalactiae

LINKS: Ecology Home | HMT-0537: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus agalactiae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 HMP V3-V5 HMP Metaphlan ND:Dewhirst35x9

No Available Datasets for Species: Streptococcus agalactiae

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0	0	0.01	0.02	0.01	0.01	0	0.01	0.01	0	0	0	0.01	0	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0.01	0.01	0	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.01	0.01	0	0.03	0.03	0.01	0.01	0.01	0.03	0.01	0.01	0	0	0.01	0	0.01	0.02	0
Stdev	0	0	0	0.01	0.01	0	0	0	0.01	0.01	0	0	0	0	0	0.01	0.03	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.06	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0.04	0	0	0	0	0	0.04	0	0.37	0.18	0.13	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	0.06	0.03	0
Stdev	0	0	0	0	0	0	0.47	0	0	0	0	0	0.37	0	2.27	1.03	0.82	0
Prev(%)	0	0	0	0	0	0	3.57	0	0	0	0	0	5.17	0	18.31	17.57	13.16	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0.13	0.06	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0
Stdev	0	0	0	0	0	0	0	0.08	0	0	0	0	0	0	0.94	0.52	0.40	0
Prev(%)	0	0	0	0	0	0	0	6.33	0	0	0	0	0	0	11.49	7.10	8.38	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.06	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0.23	0.23	0
Prev(%)	0	0	0	0	0	0	0	0	0	0	0.45	0	0	0	0	7.14	2.02	0

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