HOMD ::Species:Streptococcus gordonii

Species: Streptococcus gordonii (HMT-0622) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus gordonii

LINKS: Ecology Home | HMT-0622: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus gordonii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus gordonii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.64	0.74	0.22	0.68	0.74	0.08	0.17	0.03	0.05	0.05	0.03	0.03	0.02	0.23	0	0.06	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.10	0.13	0.01	0.07	0.14	0.08	0.08	0.01	0.02	0.02	0	0	0	0.23	0	0	0	0
90^thp	1.41	1.67	0.55	1.59	1.83	0.08	0.28	0.04	0.08	0.09	0.07	0.07	0.02	0.23	0	0.15	0.01	0
Stdev	0.50	0.76	0.34	1.08	0.93	0	0.11	0.01	0.06	0.04	0.05	0.08	0.07	0	0	0.15	0.05	0.02
Prev(%)	83.33	91.90	20.83	60.00	66.25	0	37.50	14.29	4.55	17.73	1.54	8.70	3.33	0	0	12.50	1.06	0.53

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.72	0.88	0.28	0.61	0.10	0.08	0.05	0.04	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	2.10	3.03	0.51	1.78	0.25	0.22	0.07	0.10	0.04	0
Stdev	1.29	1.45	0.84	0.95	0.23	0.15	0.15	0.09	0.03	0
Prev(%)	83.12	83.12	54.55	87.01	63.64	46.75	44.16	38.96	20.78	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. gordonii and S. sp. HMT 056 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.26	0.38	0.11	0.20	0.05	0.06	0.02	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.73	0.94	0.18	0.49	0.11	0.14	0.05	0.05	0.03	0
Stdev	0.51	0.55	0.35	0.37	0.12	0.08	0.06	0.13	0.03	0
Prev(%)	80.41	87.84	40.54	84.46	60.81	69.59	43.92	43.24	27.70	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Because HMT-056 is not present individually, all equidistant reads were assigned to HMT-622 at these sites (SUBP,SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.58	0.74	0.31	0.71	0.09	0.06	0.03	0.04	0	0.03	0.01	0.03	0.10	0.11	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.06	0	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.56	2.07	0.47	2.05	0.20	0.18	0.06	0.05	0	0.05	0.02	0.02	0.16	0.18	0	0	0	0
Stdev	1.00	0.97	1.02	1.04	0.25	0.12	0.10	0.24	0	0.11	0.10	0.25	0.42	0.52	0	0	0	0
Prev(%)	94.70	97.35	66.43	91.78	64.43	50.77	32.14	42.00	0	23.00	15.23	16.15	21.84	19.82	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.28	1.91	0.46	1.11	0.28	0.15	0.07	0.04	0.08	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.18	0.01	0.09	0.01	0.01	0	0	0	0
90^thp	2.81	5.17	0.79	2.44	0.82	0.38	0.20	0.08	0.26	0.01
Stdev	2.64	2.28	1.05	1.75	0.42	0.24	0.14	0.06	0.18	0.01
Prev(%)	97.30	100.00	97.67	100.00	96.43	98.00	93.94	93.55	87.50	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.66	0.79	0.14	0.88	1.10	0	0.14	0	0.01	0.01	0.01	0.02	0.01	0	0	0.04	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.04	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.28	2.07	0.40	2.53	3.28	0	0.29	0.01	0.02	0.03	0	0	0	0	0	0	0	0
Stdev	0.68	1.07	0.37	2.03	1.82	0	0.13	0	0.05	0.04	0.05	0.07	0.07	0	0	0.16	0.03	0.01
Prev(%)	91.67	93.18	41.67	70.59	82.71	0	75.00	12.50	16.00	19.95	4.50	8.33	3.13	0	0	7.14	0.51	0.73

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