Species: Streptococcus pneumoniae (HMT-0734) Primary Body Site: Nasal
Download Options
LINKS: Ecology Home
| HMT-0734: [Body Sites Data]
[Taxon Description]
| Life Page: Streptococcus pneumoniae
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.18 | 0.21 | 0.03 | 5.43 | 6.13 | 4.91 | 1.27 | 0.14 | 0.77 | 0.09 | 0.07 | 0.04 | 0.07 | 1.64 | 0 | 0.08 | 0.01 | 0.01 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.06 | 0.04 | 0 | 2.87 | 2.15 | 4.91 | 0.33 | 0.05 | 0.06 | 0.02 | 0.01 | 0 | 0 | 1.64 | 0 | 0 | 0 | 0 |
| 90thp | 0.38 | 0.37 | 0.08 | 7.59 | 10.45 | 4.91 | 2.70 | 0.26 | 0.99 | 0.15 | 0.14 | 0.10 | 0.03 | 1.64 | 0.01 | 0.29 | 0.01 | 0.01 |
| Stdev | 0.13 | 0.60 | 0.04 | 2.56 | 3.11 | 0 | 1.00 | 0.10 | 2.03 | 0.15 | 0.08 | 0.04 | 0.26 | 0 | 0 | 0.14 | 0.01 | 0.02 |
| Prev(%) | 54.17 | 77.47 | 0 | 100.00 | 99.69 | 100.00 | 75.00 | 85.71 | 68.18 | 72.58 | 3.08 | 4.35 | 10.00 | 0 | 0 | 12.50 | 0 | 0.53 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
No Notes
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Because HMT-851 is not present individually, all equidistant reads were assigned to HMT-734 at this body site (ANA).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at these sites (RAF,SAL).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
Some of the reads equidistant from these taxa (058-071-073-398-423-431-638-677-734) are included in HMT-734 because they are too close to differentiate at these sites (SAL,THR).
Because HMT-851 is not present individually, all equidistant reads were assigned to HMT-734 at this body site (ANA).
Reads equidistant to HMT-398 and HMT-734 were assigned to each taxon in proportion to the abundance of HMT-398 and HMT-734 individually at these sites (RAF,SAL).
Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).
Some of the reads equidistant from these taxa (058-071-073-398-423-431-638-677-734) are included in HMT-734 because they are too close to differentiate at these sites (SAL,THR).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0.11 | 0 | 0 | 0.19 | 0 | 0 | 0 | 0.02 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0 | 0 | 0.06 | 0 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0.03 | 0.87 | 0 | 0 | 2.07 | 0 | 0 | 0 | 0.30 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 18.46 | 62.20 | 0 | 0 | 40.33 | 0 | 0 | 0 | 37.33 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
No Notes
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
Reads equally close to numerous Streptococcus taxa in the mitis/oralis/infantis cluster were divided equally among taxa except not assigned to S. pneumoniae.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.24 | 0.33 | 0.94 | 1.07 | 0.32 | 0.23 | 0.46 | 0.63 | 0.53 | 0.03 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0.02 | 0.02 | 0.18 | 0.05 | 0.02 | 0.01 | 0.01 | 0 | 0 |
| 90thp | 0.73 | 0.79 | 2.56 | 1.86 | 0.86 | 0.64 | 1.43 | 1.14 | 2.77 | 0.05 |
| Stdev | 0.34 | 0.50 | 1.43 | 1.18 | 0.41 | 0.38 | 0.72 | 1.81 | 1.20 | 0.07 |
| Prev(%) | 93.24 | 97.06 | 100.00 | 100.00 | 96.43 | 98.00 | 100.00 | 96.77 | 87.50 | 45.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0 | 0 | 0.15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0.02 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.10 | 0.01 | 0 | 1.72 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0.53 | 0 | 0 | 12.50 | 16.00 | 0 | 2.25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
