HOMD ::Species:Streptococcus salivarius

Species: Streptococcus salivarius (HMT-0755) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus salivarius

LINKS: Ecology Home | HMT-0755: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus salivarius

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus salivarius

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.03	0.02	0.08	0.46	0.52	0.78	1.20	1.82	3.38	0.12	0.01	0.01	0.27	0	0.01	0.02	0.04
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0.02	0.06	0.52	0.05	0.42	0.30	0.34	0.01	0	0	0.27	0	0	0	0
90^thp	0.04	0.03	0.04	0.15	0.97	0.52	1.86	2.50	4.70	7.30	0.23	0.03	0.01	0.27	0	0.03	0.06	0.03
Stdev	0.02	0.20	0.03	0.07	0.80	0	0.84	1.02	1.56	3.26	0.30	0.01	0.02	0	0	0.01	0.05	0.46
Prev(%)	4.17	6.08	0	33.33	53.56	100.00	62.50	100.00	95.45	98.11	3.08	0	3.33	0	0	0	0	4.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to S. salivarius and S. vestibularis were assigned to S.salivarius, except for oligotypes V1V3_291 and V1V3_333 which were assigned to S. vestibularis

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.14	0.09	4.16	2.75	6.96	2.94	7.95	7.86	8.94	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.10	0.53	0.27	0.63	0.66	0.99	0
90^thp	0.20	0.18	12.10	6.19	18.60	7.57	19.21	15.79	20.22	0.05
Stdev	0.61	0.21	11.09	5.27	8.26	3.17	8.23	8.31	8.32	0.04
Prev(%)	54.55	58.44	76.62	94.81	100.00	94.81	98.70	98.70	98.70	24.68

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to S. salivarius, S. thermophilus, and S. vestibularis were assigned to S. salivarius.

Reads equally close to S. salivarius, S. thermophilus, S. vestibularis, and S. anginosus were assigned half to S. salivarius and half to S. anginosus.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.12	0.07	2.49	2.49	6.99	2.94	6.72	6.04	8.53	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.07	0.52	0.24	0.45	0.34	0.55	0
90^thp	0.20	0.19	5.61	6.32	18.00	7.12	16.57	12.90	21.85	0.04
Stdev	0.51	0.14	7.99	4.51	8.43	3.62	6.85	7.46	8.79	0.03
Prev(%)	43.92	50.00	74.32	95.27	98.65	98.65	98.65	97.97	98.65	26.57

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0	0.67	0.84	3.94	2.62	5.37	5.63	6.79	0.22	0.19	0.15	1.31	1.51	0.12	0.19	0.04	15.66
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.02	0.27	0.06	0.38	0.46	0.56	0	0	0	0	0	0	0	0	0
90^thp	0.06	0	1.40	2.00	10.66	7.30	12.67	12.18	15.21	0.48	0.33	0.27	3.74	4.06	0.10	0.13	0.05	36.17
Stdev	0.51	0	1.93	1.79	4.88	3.60	6.04	6.50	6.22	0.62	0.61	0.72	3.17	3.80	0.59	1.02	0.17	16.50
Prev(%)	52.32	0	84.61	90.41	97.99	94.61	98.81	98.67	100.00	65.00	57.47	49.01	67.82	69.58	56.34	62.16	31.58	84.97

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to S. salivarius and S. vestibularis were assigned to S. salivarius.

Reads equally close to S. thermophilus and S. salivarius were assigned to S. salivarius.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.53	0.75	5.17	4.97	10.86	8.88	11.23	9.23	7.98	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.01	0.03	0.24	1.00	0.11	0.93	0.73	0.13	0
90^thp	1.26	0.87	15.23	11.46	25.91	24.98	24.78	21.63	21.73	0.04
Stdev	1.38	2.67	10.87	6.59	10.12	11.03	9.61	8.52	9.01	0.05
Prev(%)	95.95	100.00	100.00	100.00	100.00	100.00	100.00	100.00	100.00	20.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0.03	0.01	0.05	0.65	0.79	0.88	1.59	1.94	4.13	0.03	0	0	0	0.04	0.04	0.03	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.79	0.01	0.40	0.25	0.34	0	0	0	0	0	0	0	0
90^thp	0	0.01	0.01	0.12	1.59	0.79	2.21	3.17	4.55	9.30	0	0.01	0	0	0	0.01	0	0
Stdev	0.01	0.28	0.02	0.12	1.22	0	1.02	1.28	1.79	4.10	0.21	0.01	0.01	0	0.12	0.13	0.32	0.46
Prev(%)	8.33	13.64	12.50	41.18	82.98	100.00	87.50	100.00	96.00	98.12	7.66	12.50	6.25	0	9.09	14.29	7.58	8.54

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