Species: Streptococcus sp. HMT-057 (HMT-0057) Primary Body Site: Oral
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LINKS: Ecology Home
| HMT-0057: [Body Sites Data]
[Taxon Description]
| Life Page: Streptococcus sp. HMT-057
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to S. parasanguinis clade 411, S. peroris, and S. sp. HMT 057 were assigned one third to each taxon
reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon
reads equally close to S. parasanguinis clade 411, S. peroris, and S. sp. HMT 057 were assigned one third to each taxon
reads equally close to S. parasanguinis clade 411,S. peroris, S. sp. HMT 056, and S. sp. HMT 057 were assigned one fourth to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0 | 0 | 0.01 | 0.02 | 0.05 | 0.04 | 0.06 | 0.06 | 0.13 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.01 | 0.01 | 0.02 | 0.05 | 0.12 | 0.07 | 0.16 | 0.12 | 0.37 | 0 |
| Stdev | 0 | 0.01 | 0.01 | 0.03 | 0.09 | 0.12 | 0.12 | 0.12 | 0.23 | 0 |
| Prev(%) | 20.78 | 20.78 | 29.87 | 62.34 | 80.52 | 51.95 | 59.74 | 76.62 | 89.61 | 1.30 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
Reads equally close to S. australis, S. cristatus clade 578, S. parasanguinis clades 411 and 721, S. sinensis, and S. sp. HMT 057 and 066 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.05 | 0.07 | 0.03 | 0.16 | 0.49 | 0.31 | 0.48 | 0.42 | 0.85 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0.01 | 0.09 | 0.06 | 0.11 | 0.08 | 0.18 | 0 |
| 90thp | 0.12 | 0.16 | 0.10 | 0.42 | 1.05 | 0.67 | 1.02 | 0.94 | 1.75 | 0 |
| Stdev | 0.09 | 0.11 | 0.07 | 0.20 | 0.45 | 0.33 | 0.40 | 0.38 | 0.74 | 0 |
| Prev(%) | 79.05 | 86.49 | 56.08 | 99.32 | 100.00 | 100.00 | 99.32 | 97.97 | 100.00 | 16.08 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
No Notes
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
No Notes
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 057 and 411 were assigned half to each taxon.
Reads equally close to HMT 057 and 411 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0 | 0.01 | 0.31 | 0.13 | 0.20 | 0.43 | 0.49 | 0.39 | 0.69 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0.01 | 0.04 | 0.04 | 0.02 | 0.03 | 0 |
| 90thp | 0.01 | 0.02 | 1.48 | 0.49 | 0.56 | 1.02 | 1.23 | 1.08 | 1.72 | 0 |
| Stdev | 0.01 | 0.01 | 0.69 | 0.20 | 0.24 | 0.50 | 0.64 | 0.58 | 1.14 | 0 |
| Prev(%) | 44.59 | 55.88 | 79.07 | 88.57 | 100.00 | 100.00 | 100.00 | 96.77 | 97.50 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
