Species: Streptococcus sp. HMT-074 (HMT-0074) Primary Body Site: Oral
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LINKS: Ecology Home
| HMT-0074: [Body Sites Data]
[Taxon Description]
| Life Page: Streptococcus sp. HMT-074
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
reads equally close to S. infantis, S. mitis, S. oralis, S. australis, S. cristatus, S. parasanguinis clade 721, S. pneumoniae, and S. sp. HMT 061, 064, 066, 074, 423 were divided equally among taxa except not assigned to S. pneumoniae
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.69 | 0.76 | 4.76 | 4.65 | 3.28 | 0.79 | 1.41 | 1.60 | 0.60 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.12 | 0.20 | 2.60 | 2.12 | 1.20 | 0.17 | 0.16 | 0.21 | 0.13 | 0 |
| 90thp | 1.48 | 1.61 | 6.87 | 7.26 | 5.88 | 1.45 | 3.63 | 4.43 | 1.31 | 0.01 |
| Stdev | 0.93 | 0.57 | 1.80 | 1.92 | 1.77 | 0.58 | 1.51 | 1.78 | 0.49 | 0 |
| Prev(%) | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 97.40 | 100.00 | 100.00 | 100.00 | 49.35 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.
Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
Reads equally close to S. infantis clade 638, S. oralis subsp. dentisani clade 058, and S. sp. HMT 061 and 074 were assigned one-fourth to each taxon.
Reads equally close to S. agalactiae, S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. pyogenes, S. sanguinis, and S. sp. HMT 061 and 074 were assigned one-fifth each to S. infantis clade 638, S. oralis subsp. dentisani clade 058, S. sanguinis, and S. sp. HMT 061 and 074.
Reads equally close to S. mitis, S. infantis, S. lactarius, S. oralis, S. peroris, and S. sp. HMT 061, 064, 074, and 423 were divided equally among taxa.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.31 | 0.36 | 4.40 | 4.92 | 5.00 | 1.10 | 2.42 | 2.00 | 1.29 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.01 | 0.01 | 0.13 | 1.17 | 0.96 | 0.30 | 0.34 | 0.21 | 0.38 | 0 |
| 90thp | 0.64 | 0.65 | 10.33 | 10.77 | 11.00 | 2.09 | 5.74 | 4.05 | 2.61 | 0 |
| Stdev | 0.68 | 0.98 | 4.52 | 3.80 | 4.09 | 0.78 | 2.65 | 2.40 | 0.94 | 0.01 |
| Prev(%) | 92.57 | 93.24 | 99.32 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 100.00 | 12.59 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
No Notes
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
No Notes
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 066 and 074 were assigned half to each taxon.
Reads equally close to HMT 066 and 074 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.03 | 0.07 | 0.13 | 0.39 | 0.45 | 0.67 | 0.66 | 0.73 | 0.52 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0.01 | 0.02 | 0.06 | 0.07 | 0.05 | 0.07 | 0.03 | 0 |
| 90thp | 0.09 | 0.14 | 0.24 | 0.78 | 0.91 | 1.53 | 1.98 | 1.29 | 1.12 | 0 |
| Stdev | 0.06 | 0.14 | 0.25 | 0.69 | 0.39 | 0.70 | 0.83 | 1.21 | 0.72 | 0 |
| Prev(%) | 93.24 | 97.06 | 97.67 | 97.14 | 100.00 | 100.00 | 100.00 | 96.77 | 100.00 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
