HOMD ::Species:Streptococcus thermophilus

Species: Streptococcus thermophilus (HMT-0152) Primary Body Site: Environmental

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus thermophilus

LINKS: Ecology Home | HMT-0152: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus thermophilus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 ND:Erenv3v5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus thermophilus

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.01	0	0.03	0.09	0.06	0.08	0.07	0.11	0.24	0.07	0.02	0.01	0.14	0	0	0	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0.01	0.02	0.06	0.01	0.03	0.02	0.03	0	0	0	0.14	0	0	0	0
90^thp	0.01	0.01	0	0.06	0.23	0.06	0.21	0.13	0.20	0.52	0.07	0.03	0.04	0.14	0	0	0.01	0.03
Stdev	0.01	0.02	0.01	0.03	0.14	0	0.10	0.04	0.09	0.22	0.28	0.03	0.03	0	0	0	0.01	0.04
Prev(%)	0	1.77	0	6.67	3.41	0	12.50	14.29	9.09	67.38	4.62	4.35	13.33	0	0	0	0	4.00

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0	0.07	0.02	0.06	0.62	0.12	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0.09	0.04	0.03	0.24	0.24	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0	0.30	0.10	0.42	7.03	0.61	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	23.67	20.11	19.26	33.33	29.03	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to S. thermophilus and S. salivarius were assigned to S. salivarius.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0.01	0.05	0.06	0.07	0.05	0.10	0.07	0.04	0.30
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0.01	0	0	0	0	0
90^thp	0.03	0.02	0.15	0.14	0.15	0.14	0.10	0.11	0.05	0.01
Stdev	0.02	0.03	0.11	0.10	0.08	0.07	0.41	0.20	0.15	1.31
Prev(%)	52.70	50.00	53.49	85.71	96.43	76.00	81.82	87.10	80.00	15.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0.01	0	0.02	0	0	0	0.02	0.01	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0.05	0	0	0	0	0.01	0.02	0	0	0	0	0
Stdev	0	0	0	0	0.11	0	0.06	0	0	0.01	0.13	0.02	0.02	0	0	0	0.01	0.01
Prev(%)	0	0.76	0	0	2.66	0	12.50	0	0	2.58	3.15	12.50	18.75	0	0	0	0.51	8.18

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