HOMD ::Species:Streptococcus vestibularis

Species: Streptococcus vestibularis (HMT-0021) Primary Body Site: Oral

Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus vestibularis

LINKS: Ecology Home | HMT-0021: [Body Sites Data] [Taxon Description] | Life Page: Streptococcus vestibularis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 ND:Erenv3v5 HMP V1-V3 ND:HMPv3v5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Streptococcus vestibularis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.06	0.03	0.03	0.38	0.86	0.40	0.26	0.27	0.44	0.81	0.04	0.01	0.01	0.22	0	0.01	0.01	0.01
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0.12	0.15	0.40	0.10	0.10	0.08	0.09	0	0	0	0.22	0	0	0	0
90^thp	0.06	0.06	0.04	0.76	2.11	0.40	0.56	0.49	0.75	1.78	0.08	0.01	0.01	0.22	0	0.02	0.01	0.01
Stdev	0.14	0.07	0.08	0.25	1.68	0	0.21	0.18	0.35	0.75	0.08	0.01	0.01	0	0	0.01	0.01	0.11
Prev(%)	16.67	11.90	8.33	33.33	47.37	100.00	37.50	85.71	72.73	94.09	3.08	0	0	0	0	0	0	1.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to S. salivarius and S. vestibularis were assigned to S.salivarius, except for oligotypes V1V3_291 and V1V3_333 which were assigned to S. vestibularis

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0.17	0.13	0.16	0.02	0.04	0.07	0.07	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.56	0.22	0.21	0.07	0.13	0.18	0.18	0
Stdev	0.02	0.01	0.50	0.42	0.58	0.04	0.06	0.13	0.14	0
Prev(%)	9.09	9.09	36.36	66.23	67.53	29.87	45.45	58.44	74.03	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.06	2.97	1.50	2.77	0.36	0.51	0.67	0.72	0.03	0.02	0.03	0.07	0.08	0	0	0.06	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.13	0.13	8.25	5.35	8.76	0.88	1.16	1.97	1.40	0.05	0.02	0.03	0.24	0.16	0	0	0.02	0
Stdev	0.54	0.15	8.83	2.83	6.58	0.80	1.27	1.71	2.13	0.12	0.10	0.20	0.20	0.41	0	0	0.33	0
Prev(%)	47.02	62.91	74.13	92.47	89.26	63.85	70.83	81.33	83.23	23.33	14.37	17.85	27.01	21.66	0	0	28.95	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to S. salivarius and S. vestibularis were assigned to S. salivarius.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.04	0.03	0.53	0.26	0.25	0.04	0.04	0.02	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.03	1.82	0.59	0.63	0.12	0.07	0.05	0.04	0
Stdev	0.14	0.12	1.41	0.63	0.72	0.08	0.07	0.02	0.02	0
Prev(%)	47.30	47.06	67.44	91.43	82.14	74.00	84.85	83.87	70.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.01	0.02	0.29	0.91	0.05	0.03	0.09	0.01	0.01	0.04	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.05	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.03	0	0.80	2.48	0.05	0.08	0.01	0.04	0.02	0	0	0	0	0	0	0	0
Stdev	0.09	0.04	0.08	0.66	2.49	0	0.04	0.35	0.03	0.02	0.62	0	0	0	0	0	0	0
Prev(%)	12.50	14.39	8.33	47.06	51.06	100.00	37.50	12.50	16.00	17.61	0.45	4.17	0	0	0	0	0	0.18

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